Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20164 and SM_b20165 are separated by 106 nucleotides SM_b20165 and SM_b20166 overlap by 4 nucleotides SM_b20166 and SM_b20167 are separated by 73 nucleotides
SM_b20164: SM_b20164 - sensor histidine kinase, at 181,977 to 184,220
_b20164
SM_b20165: SM_b20165 - hypothetical protein, at 184,327 to 184,998
_b20165
SM_b20166: SM_b20166 - hypothetical protein, at 184,995 to 185,348
_b20166
SM_b20167: SM_b20167 - hypothetical protein, at 185,422 to 186,234
_b20167
Position (kb) 184
185 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 183.510 kb on + strand, within SM_b20164 at 183.510 kb on + strand, within SM_b20164 at 183.511 kb on - strand, within SM_b20164 at 183.513 kb on - strand, within SM_b20164 at 183.568 kb on + strand, within SM_b20164 at 183.569 kb on - strand, within SM_b20164 at 183.569 kb on - strand, within SM_b20164 at 183.574 kb on + strand, within SM_b20164 at 183.574 kb on + strand, within SM_b20164 at 183.575 kb on - strand, within SM_b20164 at 183.575 kb on - strand, within SM_b20164 at 183.575 kb on - strand, within SM_b20164 at 183.595 kb on + strand, within SM_b20164 at 184.006 kb on - strand at 184.034 kb on - strand at 184.267 kb on + strand at 184.268 kb on - strand at 184.332 kb on + strand at 184.332 kb on + strand at 184.399 kb on + strand, within SM_b20165 at 184.484 kb on - strand, within SM_b20165 at 184.484 kb on - strand, within SM_b20165 at 184.576 kb on + strand, within SM_b20165 at 184.577 kb on - strand, within SM_b20165 at 184.609 kb on + strand, within SM_b20165 at 184.610 kb on - strand, within SM_b20165 at 184.699 kb on + strand, within SM_b20165 at 184.699 kb on + strand, within SM_b20165 at 184.699 kb on + strand, within SM_b20165 at 184.699 kb on + strand, within SM_b20165 at 184.897 kb on + strand, within SM_b20165 at 184.900 kb on + strand, within SM_b20165 at 184.900 kb on + strand, within SM_b20165 at 185.106 kb on + strand, within SM_b20166 at 185.106 kb on + strand, within SM_b20166 at 185.106 kb on + strand, within SM_b20166 at 185.149 kb on + strand, within SM_b20166 at 185.208 kb on + strand, within SM_b20166 at 185.208 kb on + strand, within SM_b20166 at 185.208 kb on + strand, within SM_b20166 at 185.209 kb on - strand, within SM_b20166 at 185.209 kb on - strand, within SM_b20166 at 185.346 kb on + strand at 185.472 kb on + strand at 185.517 kb on - strand, within SM_b20167 at 185.517 kb on - strand, within SM_b20167 at 185.517 kb on - strand, within SM_b20167 at 185.517 kb on - strand, within SM_b20167 at 185.517 kb on - strand, within SM_b20167 at 185.663 kb on + strand, within SM_b20167 at 185.664 kb on - strand, within SM_b20167 at 185.664 kb on - strand, within SM_b20167 at 185.711 kb on - strand, within SM_b20167
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 183,510 + SM_b20164 0.68 +0.7 183,510 + SM_b20164 0.68 +0.3 183,511 - SM_b20164 0.68 -1.7 183,513 - SM_b20164 0.68 -0.3 183,568 + SM_b20164 0.71 -1.0 183,569 - SM_b20164 0.71 +0.9 183,569 - SM_b20164 0.71 -4.5 183,574 + SM_b20164 0.71 -1.6 183,574 + SM_b20164 0.71 +1.5 183,575 - SM_b20164 0.71 -3.9 183,575 - SM_b20164 0.71 +0.1 183,575 - SM_b20164 0.71 -0.9 183,595 + SM_b20164 0.72 +1.1 184,006 - +0.4 184,034 - +0.2 184,267 + -0.2 184,268 - +0.4 184,332 + +0.4 184,332 + -1.3 184,399 + SM_b20165 0.11 -0.9 184,484 - SM_b20165 0.23 +1.0 184,484 - SM_b20165 0.23 -0.2 184,576 + SM_b20165 0.37 -0.2 184,577 - SM_b20165 0.37 +1.8 184,609 + SM_b20165 0.42 +0.3 184,610 - SM_b20165 0.42 -4.0 184,699 + SM_b20165 0.55 +0.2 184,699 + SM_b20165 0.55 -1.6 184,699 + SM_b20165 0.55 -1.5 184,699 + SM_b20165 0.55 -1.2 184,897 + SM_b20165 0.85 -0.5 184,900 + SM_b20165 0.85 -2.2 184,900 + SM_b20165 0.85 -0.4 185,106 + SM_b20166 0.31 -2.5 185,106 + SM_b20166 0.31 -1.0 185,106 + SM_b20166 0.31 +0.4 185,149 + SM_b20166 0.44 -0.3 185,208 + SM_b20166 0.60 -1.0 185,208 + SM_b20166 0.60 -2.7 185,208 + SM_b20166 0.60 +0.5 185,209 - SM_b20166 0.60 -0.6 185,209 - SM_b20166 0.60 +4.6 185,346 + +0.3 185,472 + +2.3 185,517 - SM_b20167 0.12 +1.7 185,517 - SM_b20167 0.12 -0.9 185,517 - SM_b20167 0.12 +0.3 185,517 - SM_b20167 0.12 +1.6 185,517 - SM_b20167 0.12 +0.8 185,663 + SM_b20167 0.30 -0.0 185,664 - SM_b20167 0.30 -1.9 185,664 - SM_b20167 0.30 +0.4 185,711 - SM_b20167 0.36 +1.5
Or see this region's nucleotide sequence