Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20136 and SM_b20137 are separated by 141 nucleotides SM_b20137 and SM_b20138 are separated by 39 nucleotides
SM_b20136: SM_b20136 - hypothetical protein, at 149,680 to 151,053
_b20136
SM_b20137: SM_b20137 - hypothetical protein, at 151,195 to 152,136
_b20137
SM_b20138: SM_b20138 - hypothetical protein, at 152,176 to 153,102
_b20138
Position (kb)
151
152
153 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 150.249 kb on - strand, within SM_b20136 at 150.327 kb on - strand, within SM_b20136 at 150.361 kb on + strand, within SM_b20136 at 150.361 kb on + strand, within SM_b20136 at 150.362 kb on - strand, within SM_b20136 at 150.590 kb on + strand, within SM_b20136 at 150.634 kb on + strand, within SM_b20136 at 150.634 kb on + strand, within SM_b20136 at 150.635 kb on - strand, within SM_b20136 at 150.650 kb on + strand at 150.651 kb on - strand, within SM_b20136 at 150.785 kb on + strand, within SM_b20136 at 150.785 kb on + strand, within SM_b20136 at 150.985 kb on + strand at 150.986 kb on - strand at 150.998 kb on + strand at 150.999 kb on - strand at 151.054 kb on - strand at 151.056 kb on + strand at 151.056 kb on + strand at 151.057 kb on - strand at 151.057 kb on - strand at 151.206 kb on + strand at 151.207 kb on - strand at 151.238 kb on + strand at 151.238 kb on + strand at 151.239 kb on - strand at 151.242 kb on + strand at 151.518 kb on - strand, within SM_b20137 at 151.562 kb on + strand, within SM_b20137 at 151.655 kb on + strand, within SM_b20137 at 151.655 kb on + strand, within SM_b20137 at 151.655 kb on + strand, within SM_b20137 at 151.655 kb on + strand, within SM_b20137 at 151.655 kb on + strand at 151.656 kb on - strand, within SM_b20137 at 151.656 kb on - strand, within SM_b20137 at 151.853 kb on + strand, within SM_b20137 at 151.853 kb on + strand, within SM_b20137 at 151.907 kb on + strand, within SM_b20137 at 151.908 kb on - strand, within SM_b20137 at 151.908 kb on - strand, within SM_b20137 at 151.916 kb on + strand, within SM_b20137 at 151.965 kb on + strand, within SM_b20137 at 152.025 kb on + strand, within SM_b20137 at 152.026 kb on - strand, within SM_b20137 at 152.027 kb on + strand, within SM_b20137 at 152.027 kb on + strand, within SM_b20137 at 152.027 kb on + strand, within SM_b20137 at 152.027 kb on + strand, within SM_b20137 at 152.027 kb on + strand, within SM_b20137 at 152.028 kb on - strand, within SM_b20137 at 152.028 kb on - strand, within SM_b20137 at 152.028 kb on - strand, within SM_b20137 at 152.028 kb on - strand, within SM_b20137 at 152.028 kb on - strand, within SM_b20137 at 152.028 kb on - strand, within SM_b20137 at 152.139 kb on + strand at 152.139 kb on + strand at 152.140 kb on - strand at 152.140 kb on - strand at 152.291 kb on + strand, within SM_b20138 at 152.291 kb on + strand, within SM_b20138 at 152.292 kb on - strand, within SM_b20138 at 152.478 kb on - strand, within SM_b20138 at 152.478 kb on - strand, within SM_b20138 at 152.523 kb on - strand, within SM_b20138 at 152.616 kb on - strand, within SM_b20138 at 152.616 kb on - strand, within SM_b20138 at 152.711 kb on + strand, within SM_b20138 at 152.754 kb on - strand, within SM_b20138 at 152.802 kb on - strand, within SM_b20138 at 152.802 kb on - strand, within SM_b20138 at 152.813 kb on + strand at 152.876 kb on + strand, within SM_b20138 at 152.876 kb on + strand, within SM_b20138 at 152.877 kb on - strand, within SM_b20138 at 152.877 kb on - strand, within SM_b20138 at 152.877 kb on - strand, within SM_b20138 at 152.877 kb on - strand, within SM_b20138 at 152.924 kb on + strand, within SM_b20138 at 152.925 kb on - strand, within SM_b20138 at 152.925 kb on - strand, within SM_b20138 at 152.925 kb on - strand, within SM_b20138 at 152.990 kb on + strand, within SM_b20138 at 152.991 kb on - strand, within SM_b20138 at 152.991 kb on - strand, within SM_b20138 at 152.991 kb on - strand, within SM_b20138 at 152.991 kb on - strand, within SM_b20138 at 152.993 kb on + strand, within SM_b20138 at 152.994 kb on - strand, within SM_b20138 at 152.994 kb on - strand, within SM_b20138 at 152.994 kb on - strand, within SM_b20138 at 153.087 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 150,249 - SM_b20136 0.41 -0.1 150,327 - SM_b20136 0.47 -0.3 150,361 + SM_b20136 0.50 +0.9 150,361 + SM_b20136 0.50 +3.8 150,362 - SM_b20136 0.50 -1.0 150,590 + SM_b20136 0.66 -1.2 150,634 + SM_b20136 0.69 +1.0 150,634 + SM_b20136 0.69 +0.4 150,635 - SM_b20136 0.70 +1.0 150,650 + +0.0 150,651 - SM_b20136 0.71 -1.6 150,785 + SM_b20136 0.80 -4.4 150,785 + SM_b20136 0.80 +2.7 150,985 + -2.2 150,986 - +0.5 150,998 + +0.8 150,999 - -3.6 151,054 - +0.1 151,056 + +1.3 151,056 + -2.3 151,057 - +0.0 151,057 - -0.6 151,206 + -0.1 151,207 - +0.2 151,238 + -2.8 151,238 + -1.0 151,239 - +1.1 151,242 + +1.3 151,518 - SM_b20137 0.34 -0.9 151,562 + SM_b20137 0.39 +3.2 151,655 + SM_b20137 0.49 +0.8 151,655 + SM_b20137 0.49 -1.3 151,655 + SM_b20137 0.49 -0.6 151,655 + SM_b20137 0.49 +1.8 151,655 + +4.0 151,656 - SM_b20137 0.49 -2.2 151,656 - SM_b20137 0.49 -0.6 151,853 + SM_b20137 0.70 +0.6 151,853 + SM_b20137 0.70 +0.6 151,907 + SM_b20137 0.76 -2.5 151,908 - SM_b20137 0.76 +2.3 151,908 - SM_b20137 0.76 +0.3 151,916 + SM_b20137 0.77 -0.9 151,965 + SM_b20137 0.82 +0.3 152,025 + SM_b20137 0.88 +0.9 152,026 - SM_b20137 0.88 +1.9 152,027 + SM_b20137 0.88 +0.5 152,027 + SM_b20137 0.88 -0.2 152,027 + SM_b20137 0.88 +0.3 152,027 + SM_b20137 0.88 -0.9 152,027 + SM_b20137 0.88 -3.3 152,028 - SM_b20137 0.88 +0.1 152,028 - SM_b20137 0.88 -1.5 152,028 - SM_b20137 0.88 +0.6 152,028 - SM_b20137 0.88 +0.1 152,028 - SM_b20137 0.88 +1.0 152,028 - SM_b20137 0.88 -0.3 152,139 + +0.9 152,139 + -0.5 152,140 - +0.0 152,140 - -0.9 152,291 + SM_b20138 0.12 -0.2 152,291 + SM_b20138 0.12 -0.5 152,292 - SM_b20138 0.13 -0.9 152,478 - SM_b20138 0.33 -1.4 152,478 - SM_b20138 0.33 -0.6 152,523 - SM_b20138 0.37 -2.3 152,616 - SM_b20138 0.47 +0.8 152,616 - SM_b20138 0.47 -0.5 152,711 + SM_b20138 0.58 -1.4 152,754 - SM_b20138 0.62 +0.4 152,802 - SM_b20138 0.68 +0.4 152,802 - SM_b20138 0.68 +0.3 152,813 + +1.0 152,876 + SM_b20138 0.76 +1.2 152,876 + SM_b20138 0.76 +1.1 152,877 - SM_b20138 0.76 -1.0 152,877 - SM_b20138 0.76 -0.5 152,877 - SM_b20138 0.76 +1.0 152,877 - SM_b20138 0.76 +1.5 152,924 + SM_b20138 0.81 +0.7 152,925 - SM_b20138 0.81 -0.4 152,925 - SM_b20138 0.81 +1.0 152,925 - SM_b20138 0.81 +1.0 152,990 + SM_b20138 0.88 -2.0 152,991 - SM_b20138 0.88 +0.1 152,991 - SM_b20138 0.88 -1.6 152,991 - SM_b20138 0.88 -1.0 152,991 - SM_b20138 0.88 +0.4 152,993 + SM_b20138 0.88 +1.0 152,994 - SM_b20138 0.88 -0.6 152,994 - SM_b20138 0.88 -0.1 152,994 - SM_b20138 0.88 +1.6 153,087 + -0.3
Or see this region's nucleotide sequence