Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20111 and SM_b20112 overlap by 4 nucleotides SM_b20112 and SM_b20113 are separated by 36 nucleotides SM_b20113 and SM_b20114 are separated by 2 nucleotides
SM_b20111: SM_b20111 - oligopeptide ABC transporter ATP-binding protein, at 122,148 to 123,788
_b20111
SM_b20112: SM_b20112 - hypothetical protein, at 123,785 to 124,672
_b20112
SM_b20113: SM_b20113 - dehydrogenase, at 124,709 to 125,641
_b20113
SM_b20114: SM_b20114 - hypothetical protein, at 125,644 to 126,369
_b20114
Position (kb) 123
124
125 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 122.904 kb on + strand, within SM_b20111 at 122.905 kb on - strand, within SM_b20111 at 122.906 kb on + strand, within SM_b20111 at 122.945 kb on + strand, within SM_b20111 at 122.945 kb on + strand, within SM_b20111 at 122.946 kb on - strand, within SM_b20111 at 122.946 kb on - strand, within SM_b20111 at 123.015 kb on + strand, within SM_b20111 at 123.015 kb on + strand, within SM_b20111 at 123.016 kb on - strand, within SM_b20111 at 123.016 kb on - strand, within SM_b20111 at 123.018 kb on - strand, within SM_b20111 at 123.277 kb on - strand, within SM_b20111 at 123.278 kb on + strand, within SM_b20111 at 123.278 kb on + strand, within SM_b20111 at 123.278 kb on + strand, within SM_b20111 at 123.279 kb on - strand, within SM_b20111 at 123.279 kb on - strand, within SM_b20111 at 123.279 kb on - strand, within SM_b20111 at 123.597 kb on + strand, within SM_b20111 at 123.607 kb on + strand, within SM_b20111 at 123.723 kb on + strand at 123.725 kb on + strand at 123.725 kb on + strand at 123.726 kb on - strand at 123.726 kb on - strand at 123.726 kb on - strand at 123.947 kb on + strand, within SM_b20112 at 123.947 kb on + strand, within SM_b20112 at 123.948 kb on - strand, within SM_b20112 at 124.086 kb on + strand, within SM_b20112 at 124.477 kb on - strand, within SM_b20112 at 124.477 kb on - strand, within SM_b20112 at 124.477 kb on - strand, within SM_b20112 at 124.671 kb on - strand at 124.960 kb on - strand, within SM_b20113 at 125.171 kb on - strand, within SM_b20113 at 125.171 kb on - strand, within SM_b20113 at 125.171 kb on - strand, within SM_b20113 at 125.412 kb on + strand, within SM_b20113 at 125.465 kb on - strand, within SM_b20113 at 125.558 kb on - strand at 125.646 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 122,904 + SM_b20111 0.46 +0.9 122,905 - SM_b20111 0.46 +0.8 122,906 + SM_b20111 0.46 +0.2 122,945 + SM_b20111 0.49 +0.3 122,945 + SM_b20111 0.49 +0.9 122,946 - SM_b20111 0.49 +2.0 122,946 - SM_b20111 0.49 +0.1 123,015 + SM_b20111 0.53 +2.2 123,015 + SM_b20111 0.53 -4.0 123,016 - SM_b20111 0.53 +0.1 123,016 - SM_b20111 0.53 +0.9 123,018 - SM_b20111 0.53 +0.5 123,277 - SM_b20111 0.69 -0.3 123,278 + SM_b20111 0.69 +1.1 123,278 + SM_b20111 0.69 -0.2 123,278 + SM_b20111 0.69 +0.1 123,279 - SM_b20111 0.69 -1.2 123,279 - SM_b20111 0.69 -0.5 123,279 - SM_b20111 0.69 -1.3 123,597 + SM_b20111 0.88 -1.7 123,607 + SM_b20111 0.89 +0.2 123,723 + +1.0 123,725 + +0.2 123,725 + -0.6 123,726 - -0.6 123,726 - -1.2 123,726 - -2.2 123,947 + SM_b20112 0.18 +1.0 123,947 + SM_b20112 0.18 +0.6 123,948 - SM_b20112 0.18 +0.9 124,086 + SM_b20112 0.34 -0.8 124,477 - SM_b20112 0.78 -2.0 124,477 - SM_b20112 0.78 -0.3 124,477 - SM_b20112 0.78 +0.5 124,671 - +0.0 124,960 - SM_b20113 0.27 -2.1 125,171 - SM_b20113 0.50 +0.6 125,171 - SM_b20113 0.50 +0.6 125,171 - SM_b20113 0.50 -0.8 125,412 + SM_b20113 0.75 -0.7 125,465 - SM_b20113 0.81 -2.3 125,558 - -2.8 125,646 - +0.1
Or see this region's nucleotide sequence