Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20109 and SM_b20110 overlap by 4 nucleotides SM_b20110 and SM_b20111 overlap by 4 nucleotides SM_b20111 and SM_b20112 overlap by 4 nucleotides SM_b20112 and SM_b20113 are separated by 36 nucleotides
SM_b20109: SM_b20109 - peptide ABC transporter permease, at 120,284 to 121,207
_b20109
SM_b20110: SM_b20110 - oligopeptide ABC transporter permease, at 121,204 to 122,151
_b20110
SM_b20111: SM_b20111 - oligopeptide ABC transporter ATP-binding protein, at 122,148 to 123,788
_b20111
SM_b20112: SM_b20112 - hypothetical protein, at 123,785 to 124,672
_b20112
SM_b20113: SM_b20113 - dehydrogenase, at 124,709 to 125,641
_b20113
Position (kb) 122
123
124 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 121.156 kb on - strand at 121.166 kb on + strand at 121.188 kb on + strand at 121.188 kb on + strand at 121.189 kb on - strand at 121.189 kb on - strand at 121.189 kb on - strand at 121.189 kb on - strand at 121.435 kb on + strand, within SM_b20110 at 121.435 kb on + strand, within SM_b20110 at 121.436 kb on - strand, within SM_b20110 at 121.573 kb on + strand, within SM_b20110 at 121.726 kb on + strand, within SM_b20110 at 121.726 kb on + strand, within SM_b20110 at 121.726 kb on + strand, within SM_b20110 at 121.931 kb on + strand, within SM_b20110 at 121.932 kb on - strand, within SM_b20110 at 121.932 kb on - strand, within SM_b20110 at 122.053 kb on - strand, within SM_b20110 at 122.077 kb on + strand at 122.077 kb on + strand at 122.078 kb on - strand at 122.078 kb on - strand at 122.078 kb on - strand at 122.078 kb on - strand at 122.476 kb on - strand, within SM_b20111 at 122.476 kb on - strand, within SM_b20111 at 122.477 kb on + strand, within SM_b20111 at 122.904 kb on + strand, within SM_b20111 at 122.905 kb on - strand, within SM_b20111 at 122.906 kb on + strand, within SM_b20111 at 122.945 kb on + strand, within SM_b20111 at 122.945 kb on + strand, within SM_b20111 at 122.946 kb on - strand, within SM_b20111 at 122.946 kb on - strand, within SM_b20111 at 123.015 kb on + strand, within SM_b20111 at 123.015 kb on + strand, within SM_b20111 at 123.016 kb on - strand, within SM_b20111 at 123.016 kb on - strand, within SM_b20111 at 123.018 kb on - strand, within SM_b20111 at 123.277 kb on - strand, within SM_b20111 at 123.278 kb on + strand, within SM_b20111 at 123.278 kb on + strand, within SM_b20111 at 123.278 kb on + strand, within SM_b20111 at 123.279 kb on - strand, within SM_b20111 at 123.279 kb on - strand, within SM_b20111 at 123.279 kb on - strand, within SM_b20111 at 123.597 kb on + strand, within SM_b20111 at 123.607 kb on + strand, within SM_b20111 at 123.723 kb on + strand at 123.725 kb on + strand at 123.725 kb on + strand at 123.726 kb on - strand at 123.726 kb on - strand at 123.726 kb on - strand at 123.947 kb on + strand, within SM_b20112 at 123.947 kb on + strand, within SM_b20112 at 123.948 kb on - strand, within SM_b20112 at 124.086 kb on + strand, within SM_b20112 at 124.477 kb on - strand, within SM_b20112 at 124.477 kb on - strand, within SM_b20112 at 124.477 kb on - strand, within SM_b20112 at 124.671 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 121,156 - -2.6 121,166 + -2.3 121,188 + -0.3 121,188 + -0.6 121,189 - -1.3 121,189 - +3.7 121,189 - +1.3 121,189 - -1.0 121,435 + SM_b20110 0.24 -1.2 121,435 + SM_b20110 0.24 +0.0 121,436 - SM_b20110 0.24 +1.9 121,573 + SM_b20110 0.39 -2.1 121,726 + SM_b20110 0.55 +0.0 121,726 + SM_b20110 0.55 +1.1 121,726 + SM_b20110 0.55 -2.8 121,931 + SM_b20110 0.77 -3.3 121,932 - SM_b20110 0.77 +0.9 121,932 - SM_b20110 0.77 -0.8 122,053 - SM_b20110 0.90 +1.8 122,077 + -0.2 122,077 + +0.1 122,078 - +0.4 122,078 - -1.8 122,078 - +1.2 122,078 - -0.8 122,476 - SM_b20111 0.20 +0.3 122,476 - SM_b20111 0.20 +2.0 122,477 + SM_b20111 0.20 -0.0 122,904 + SM_b20111 0.46 +0.9 122,905 - SM_b20111 0.46 +0.8 122,906 + SM_b20111 0.46 +0.2 122,945 + SM_b20111 0.49 +0.3 122,945 + SM_b20111 0.49 +0.9 122,946 - SM_b20111 0.49 +2.0 122,946 - SM_b20111 0.49 +0.1 123,015 + SM_b20111 0.53 +2.2 123,015 + SM_b20111 0.53 -4.0 123,016 - SM_b20111 0.53 +0.1 123,016 - SM_b20111 0.53 +0.9 123,018 - SM_b20111 0.53 +0.5 123,277 - SM_b20111 0.69 -0.3 123,278 + SM_b20111 0.69 +1.1 123,278 + SM_b20111 0.69 -0.2 123,278 + SM_b20111 0.69 +0.1 123,279 - SM_b20111 0.69 -1.2 123,279 - SM_b20111 0.69 -0.5 123,279 - SM_b20111 0.69 -1.3 123,597 + SM_b20111 0.88 -1.7 123,607 + SM_b20111 0.89 +0.2 123,723 + +1.0 123,725 + +0.2 123,725 + -0.6 123,726 - -0.6 123,726 - -1.2 123,726 - -2.2 123,947 + SM_b20112 0.18 +1.0 123,947 + SM_b20112 0.18 +0.6 123,948 - SM_b20112 0.18 +0.9 124,086 + SM_b20112 0.34 -0.8 124,477 - SM_b20112 0.78 -2.0 124,477 - SM_b20112 0.78 -0.3 124,477 - SM_b20112 0.78 +0.5 124,671 - +0.0
Or see this region's nucleotide sequence