Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20106

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20104 and SM_b20105 are separated by 101 nucleotidesSM_b20105 and SM_b20106 are separated by 179 nucleotidesSM_b20106 and SM_b20107 are separated by 67 nucleotides SM_b20104: SM_b20104 - hypothetical protein, at 115,152 to 115,910 _b20104 SM_b20105: SM_b20105 - transcriptional regulator, at 116,012 to 116,644 _b20105 SM_b20106: SM_b20106 - transcriptional regulator, at 116,824 to 117,555 _b20106 SM_b20107: SM_b20107 - hypothetical protein, at 117,623 to 118,579 _b20107 Position (kb) 116 117 118Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 115.900 kb on + strandat 115.901 kb on - strandat 115.983 kb on + strandat 115.983 kb on + strandat 115.984 kb on - strandat 115.984 kb on - strandat 116.013 kb on + strandat 116.024 kb on + strandat 116.024 kb on + strandat 116.025 kb on - strandat 116.025 kb on - strandat 116.025 kb on - strandat 116.025 kb on - strandat 116.456 kb on + strand, within SM_b20105at 116.495 kb on + strand, within SM_b20105at 116.915 kb on + strand, within SM_b20106at 116.916 kb on - strand, within SM_b20106at 117.064 kb on + strand, within SM_b20106at 117.064 kb on + strand, within SM_b20106at 117.064 kb on + strand, within SM_b20106at 117.064 kb on + strand, within SM_b20106at 117.065 kb on - strand, within SM_b20106at 117.065 kb on - strand, within SM_b20106at 117.117 kb on + strand, within SM_b20106at 117.118 kb on - strand, within SM_b20106at 117.154 kb on + strand, within SM_b20106at 117.155 kb on - strand, within SM_b20106at 117.155 kb on - strand, within SM_b20106at 117.480 kb on - strand, within SM_b20106at 117.540 kb on + strandat 117.540 kb on + strandat 117.650 kb on + strandat 117.792 kb on - strand, within SM_b20107at 117.792 kb on - strand, within SM_b20107at 117.867 kb on + strand, within SM_b20107at 117.868 kb on - strand, within SM_b20107at 117.868 kb on - strand, within SM_b20107at 118.037 kb on + strand, within SM_b20107at 118.055 kb on + strand, within SM_b20107at 118.056 kb on - strand, within SM_b20107at 118.056 kb on - strand, within SM_b20107at 118.056 kb on - strand, within SM_b20107at 118.056 kb on - strand, within SM_b20107at 118.115 kb on + strand, within SM_b20107at 118.115 kb on + strand, within SM_b20107at 118.115 kb on + strand, within SM_b20107at 118.115 kb on + strand, within SM_b20107at 118.116 kb on - strand, within SM_b20107at 118.167 kb on + strand, within SM_b20107at 118.168 kb on - strand, within SM_b20107at 118.253 kb on + strand, within SM_b20107at 118.254 kb on - strand, within SM_b20107at 118.254 kb on - strand, within SM_b20107at 118.254 kb on - strand, within SM_b20107at 118.256 kb on - strand, within SM_b20107at 118.256 kb on - strand, within SM_b20107at 118.303 kb on + strand, within SM_b20107at 118.303 kb on + strand, within SM_b20107

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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115,900 + -0.4
115,901 - +0.2
115,983 + -0.3
115,983 + -1.1
115,984 - +0.7
115,984 - -0.0
116,013 + -0.6
116,024 + -0.5
116,024 + -1.3
116,025 - -0.3
116,025 - -0.6
116,025 - -0.4
116,025 - +1.0
116,456 + SM_b20105 0.70 +0.8
116,495 + SM_b20105 0.76 -3.6
116,915 + SM_b20106 0.12 +0.0
116,916 - SM_b20106 0.13 -0.6
117,064 + SM_b20106 0.33 +1.1
117,064 + SM_b20106 0.33 -0.8
117,064 + SM_b20106 0.33 -3.8
117,064 + SM_b20106 0.33 -2.4
117,065 - SM_b20106 0.33 +1.2
117,065 - SM_b20106 0.33 -0.8
117,117 + SM_b20106 0.40 -0.6
117,118 - SM_b20106 0.40 -0.2
117,154 + SM_b20106 0.45 +1.0
117,155 - SM_b20106 0.45 -1.1
117,155 - SM_b20106 0.45 -1.5
117,480 - SM_b20106 0.90 -0.8
117,540 + -0.1
117,540 + -4.0
117,650 + +0.7
117,792 - SM_b20107 0.18 +1.7
117,792 - SM_b20107 0.18 -1.2
117,867 + SM_b20107 0.25 -0.7
117,868 - SM_b20107 0.26 +4.2
117,868 - SM_b20107 0.26 +0.0
118,037 + SM_b20107 0.43 +0.0
118,055 + SM_b20107 0.45 +0.0
118,056 - SM_b20107 0.45 -1.0
118,056 - SM_b20107 0.45 +0.8
118,056 - SM_b20107 0.45 -0.2
118,056 - SM_b20107 0.45 +1.0
118,115 + SM_b20107 0.51 -0.6
118,115 + SM_b20107 0.51 +0.1
118,115 + SM_b20107 0.51 -2.5
118,115 + SM_b20107 0.51 +0.0
118,116 - SM_b20107 0.52 +0.3
118,167 + SM_b20107 0.57 -1.2
118,168 - SM_b20107 0.57 +0.2
118,253 + SM_b20107 0.66 -0.6
118,254 - SM_b20107 0.66 +0.7
118,254 - SM_b20107 0.66 -2.0
118,254 - SM_b20107 0.66 +2.5
118,256 - SM_b20107 0.66 +1.0
118,256 - SM_b20107 0.66 +0.2
118,303 + SM_b20107 0.71 -1.3
118,303 + SM_b20107 0.71 -3.6

Or see this region's nucleotide sequence