Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20095 and SM_b20096 are separated by 28 nucleotides SM_b20096 and SM_b20097 are separated by 1 nucleotides
SM_b20095: SM_b20095 - pyruvate oxidase, at 103,207 to 105,024
_b20095
SM_b20096: SM_b20096 - hypothetical protein, at 105,053 to 105,493
_b20096
SM_b20097: SM_b20097 - oxidoreductase, at 105,495 to 106,724
_b20097
Position (kb) 105
106 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 104.056 kb on + strand, within SM_b20095 at 104.058 kb on + strand, within SM_b20095 at 104.065 kb on + strand, within SM_b20095 at 104.065 kb on + strand, within SM_b20095 at 104.065 kb on + strand, within SM_b20095 at 104.352 kb on + strand, within SM_b20095 at 104.470 kb on + strand, within SM_b20095 at 104.470 kb on + strand, within SM_b20095 at 104.470 kb on + strand, within SM_b20095 at 104.471 kb on - strand, within SM_b20095 at 104.471 kb on - strand, within SM_b20095 at 104.471 kb on - strand, within SM_b20095 at 104.512 kb on + strand, within SM_b20095 at 105.022 kb on + strand at 105.022 kb on + strand at 105.080 kb on - strand at 105.112 kb on + strand, within SM_b20096 at 105.112 kb on + strand, within SM_b20096 at 105.112 kb on + strand, within SM_b20096 at 105.112 kb on + strand, within SM_b20096 at 105.112 kb on + strand, within SM_b20096 at 105.113 kb on - strand, within SM_b20096 at 105.146 kb on + strand, within SM_b20096 at 105.147 kb on - strand, within SM_b20096 at 105.147 kb on - strand, within SM_b20096 at 105.147 kb on - strand, within SM_b20096 at 105.147 kb on - strand, within SM_b20096 at 105.383 kb on + strand, within SM_b20096 at 105.383 kb on + strand, within SM_b20096 at 105.479 kb on + strand at 105.480 kb on - strand at 105.491 kb on + strand at 105.492 kb on - strand at 105.518 kb on + strand at 105.519 kb on - strand at 105.519 kb on - strand at 105.740 kb on - strand, within SM_b20097 at 105.740 kb on - strand, within SM_b20097 at 105.970 kb on + strand, within SM_b20097 at 105.970 kb on + strand, within SM_b20097 at 105.970 kb on + strand, within SM_b20097 at 105.970 kb on + strand, within SM_b20097 at 105.971 kb on - strand, within SM_b20097 at 105.971 kb on - strand, within SM_b20097 at 105.971 kb on - strand, within SM_b20097 at 106.236 kb on + strand, within SM_b20097 at 106.437 kb on + strand, within SM_b20097 at 106.473 kb on + strand, within SM_b20097 at 106.474 kb on - strand, within SM_b20097 at 106.474 kb on - strand, within SM_b20097 at 106.474 kb on - strand, within SM_b20097
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 104,056 + SM_b20095 0.47 -0.9 104,058 + SM_b20095 0.47 +0.3 104,065 + SM_b20095 0.47 -0.2 104,065 + SM_b20095 0.47 +1.0 104,065 + SM_b20095 0.47 +1.5 104,352 + SM_b20095 0.63 +0.8 104,470 + SM_b20095 0.69 +0.3 104,470 + SM_b20095 0.69 -0.4 104,470 + SM_b20095 0.69 -0.3 104,471 - SM_b20095 0.70 +0.7 104,471 - SM_b20095 0.70 -1.2 104,471 - SM_b20095 0.70 -1.3 104,512 + SM_b20095 0.72 -1.6 105,022 + +1.0 105,022 + +2.6 105,080 - +0.0 105,112 + SM_b20096 0.13 -1.0 105,112 + SM_b20096 0.13 +2.6 105,112 + SM_b20096 0.13 -0.1 105,112 + SM_b20096 0.13 +2.3 105,112 + SM_b20096 0.13 +1.0 105,113 - SM_b20096 0.14 +0.4 105,146 + SM_b20096 0.21 +2.5 105,147 - SM_b20096 0.21 -0.5 105,147 - SM_b20096 0.21 -3.6 105,147 - SM_b20096 0.21 -0.1 105,147 - SM_b20096 0.21 -0.6 105,383 + SM_b20096 0.75 +0.9 105,383 + SM_b20096 0.75 -2.0 105,479 + -2.3 105,480 - +1.3 105,491 + -1.3 105,492 - -1.7 105,518 + +0.6 105,519 - +0.0 105,519 - -0.1 105,740 - SM_b20097 0.20 -0.1 105,740 - SM_b20097 0.20 -1.2 105,970 + SM_b20097 0.39 -0.9 105,970 + SM_b20097 0.39 -2.6 105,970 + SM_b20097 0.39 -3.3 105,970 + SM_b20097 0.39 +0.2 105,971 - SM_b20097 0.39 -1.1 105,971 - SM_b20097 0.39 -1.0 105,971 - SM_b20097 0.39 +0.2 106,236 + SM_b20097 0.60 +0.2 106,437 + SM_b20097 0.77 +1.6 106,473 + SM_b20097 0.80 +0.7 106,474 - SM_b20097 0.80 -1.6 106,474 - SM_b20097 0.80 -0.4 106,474 - SM_b20097 0.80 -0.4
Or see this region's nucleotide sequence