Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20088

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20086 and SM_b20087 are separated by 22 nucleotidesSM_b20087 and SM_b20088 are separated by 154 nucleotidesSM_b20088 and SM_b20089 are separated by 18 nucleotidesSM_b20089 and SM_b20090 are separated by 3 nucleotidesSM_b20090 and SM_b20091 are separated by 115 nucleotides SM_b20086: SM_b20086 - hypothetical protein, at 95,472 to 95,774 _b20086 SM_b20087: SM_b20087 - hypothetical protein, at 95,797 to 96,402 _b20087 SM_b20088: SM_b20088 - hypothetical protein, at 96,557 to 98,533 _b20088 SM_b20089: SM_b20089 - hypothetical protein, at 98,552 to 98,875 _b20089 SM_b20090: SM_b20090 - hypothetical protein, at 98,879 to 99,070 _b20090 SM_b20091: SM_b20091 - hypothetical protein, at 99,186 to 99,692 _b20091 Position (kb) 96 97 98 99Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 95.694 kb on - strand, within SM_b20086at 95.694 kb on - strand, within SM_b20086at 95.716 kb on - strand, within SM_b20086at 95.762 kb on - strandat 95.828 kb on - strandat 95.887 kb on - strand, within SM_b20087at 95.942 kb on + strand, within SM_b20087at 95.942 kb on + strand, within SM_b20087at 95.943 kb on - strand, within SM_b20087at 96.029 kb on + strand, within SM_b20087at 96.030 kb on - strand, within SM_b20087at 96.281 kb on + strand, within SM_b20087at 96.282 kb on - strand, within SM_b20087at 96.303 kb on + strand, within SM_b20087at 96.348 kb on + strandat 96.349 kb on - strandat 96.512 kb on + strandat 96.513 kb on - strandat 96.513 kb on - strandat 96.749 kb on + strandat 96.750 kb on - strandat 96.750 kb on - strandat 96.750 kb on - strandat 96.750 kb on - strandat 96.751 kb on + strandat 96.751 kb on + strandat 96.752 kb on - strandat 96.752 kb on - strandat 96.752 kb on - strandat 96.797 kb on - strand, within SM_b20088at 96.860 kb on + strand, within SM_b20088at 96.860 kb on + strand, within SM_b20088at 96.860 kb on + strand, within SM_b20088at 96.861 kb on - strand, within SM_b20088at 96.861 kb on - strand, within SM_b20088at 96.861 kb on - strand, within SM_b20088at 96.861 kb on - strand, within SM_b20088at 96.861 kb on - strand, within SM_b20088at 96.866 kb on + strand, within SM_b20088at 96.867 kb on - strand, within SM_b20088at 96.868 kb on + strand, within SM_b20088at 96.869 kb on - strand, within SM_b20088at 96.937 kb on + strand, within SM_b20088at 96.937 kb on + strand, within SM_b20088at 96.938 kb on - strand, within SM_b20088at 96.999 kb on + strand, within SM_b20088at 97.026 kb on + strand, within SM_b20088at 97.187 kb on + strand, within SM_b20088at 97.482 kb on - strand, within SM_b20088at 97.482 kb on - strand, within SM_b20088at 97.595 kb on - strand, within SM_b20088at 97.595 kb on - strand, within SM_b20088at 97.631 kb on + strand, within SM_b20088at 97.646 kb on + strand, within SM_b20088at 97.646 kb on + strand, within SM_b20088at 97.646 kb on + strand, within SM_b20088at 97.648 kb on + strand, within SM_b20088at 97.648 kb on + strand, within SM_b20088at 97.649 kb on - strand, within SM_b20088at 97.651 kb on + strand, within SM_b20088at 97.651 kb on + strand, within SM_b20088at 97.730 kb on + strand, within SM_b20088at 97.769 kb on + strand, within SM_b20088at 97.931 kb on + strand, within SM_b20088at 97.934 kb on + strand, within SM_b20088at 97.934 kb on + strand, within SM_b20088at 97.935 kb on - strand, within SM_b20088at 97.946 kb on + strand, within SM_b20088at 97.946 kb on + strand, within SM_b20088at 97.947 kb on - strand, within SM_b20088at 97.947 kb on - strand, within SM_b20088at 97.947 kb on - strand, within SM_b20088at 97.947 kb on - strand, within SM_b20088at 97.950 kb on - strand, within SM_b20088at 97.988 kb on - strand, within SM_b20088at 97.988 kb on - strand, within SM_b20088at 97.988 kb on - strand, within SM_b20088at 98.286 kb on + strand, within SM_b20088at 98.287 kb on - strand, within SM_b20088at 98.405 kb on + strandat 98.493 kb on + strandat 98.493 kb on + strandat 98.494 kb on - strandat 98.494 kb on - strandat 98.553 kb on + strandat 98.554 kb on - strandat 98.554 kb on - strandat 98.800 kb on - strand, within SM_b20089at 98.800 kb on - strand, within SM_b20089at 98.853 kb on + strandat 98.854 kb on - strandat 98.854 kb on - strandat 98.855 kb on + strandat 98.856 kb on - strandat 98.880 kb on + strandat 99.180 kb on + strandat 99.192 kb on - strandat 99.404 kb on + strand, within SM_b20091at 99.405 kb on - strand, within SM_b20091at 99.489 kb on + strand, within SM_b20091at 99.491 kb on + strand, within SM_b20091at 99.491 kb on + strand, within SM_b20091at 99.491 kb on + strand, within SM_b20091at 99.492 kb on - strand, within SM_b20091at 99.492 kb on - strand, within SM_b20091at 99.503 kb on + strand, within SM_b20091at 99.504 kb on - strand, within SM_b20091at 99.507 kb on + strand, within SM_b20091

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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95,694 - SM_b20086 0.73 -0.4
95,694 - SM_b20086 0.73 +0.0
95,716 - SM_b20086 0.81 +1.0
95,762 - +0.0
95,828 - +0.4
95,887 - SM_b20087 0.15 -2.3
95,942 + SM_b20087 0.24 -4.0
95,942 + SM_b20087 0.24 -0.1
95,943 - SM_b20087 0.24 +0.5
96,029 + SM_b20087 0.38 +2.2
96,030 - SM_b20087 0.38 -3.3
96,281 + SM_b20087 0.80 +2.0
96,282 - SM_b20087 0.80 +2.8
96,303 + SM_b20087 0.83 -3.5
96,348 + +0.1
96,349 - -0.4
96,512 + -0.3
96,513 - -0.9
96,513 - +1.0
96,749 + +1.1
96,750 - -0.6
96,750 - +0.0
96,750 - -0.2
96,750 - +1.7
96,751 + -3.2
96,751 + -1.6
96,752 - -0.1
96,752 - -0.6
96,752 - -0.9
96,797 - SM_b20088 0.12 +0.1
96,860 + SM_b20088 0.15 +1.9
96,860 + SM_b20088 0.15 -1.3
96,860 + SM_b20088 0.15 -1.4
96,861 - SM_b20088 0.15 -0.4
96,861 - SM_b20088 0.15 -1.0
96,861 - SM_b20088 0.15 +2.3
96,861 - SM_b20088 0.15 -1.0
96,861 - SM_b20088 0.15 +1.3
96,866 + SM_b20088 0.16 -1.9
96,867 - SM_b20088 0.16 -1.9
96,868 + SM_b20088 0.16 -0.2
96,869 - SM_b20088 0.16 -0.6
96,937 + SM_b20088 0.19 +1.0
96,937 + SM_b20088 0.19 +0.4
96,938 - SM_b20088 0.19 +0.1
96,999 + SM_b20088 0.22 -0.6
97,026 + SM_b20088 0.24 +0.2
97,187 + SM_b20088 0.32 -0.4
97,482 - SM_b20088 0.47 -2.3
97,482 - SM_b20088 0.47 -0.8
97,595 - SM_b20088 0.53 +0.6
97,595 - SM_b20088 0.53 -1.8
97,631 + SM_b20088 0.54 -3.0
97,646 + SM_b20088 0.55 +0.4
97,646 + SM_b20088 0.55 -3.3
97,646 + SM_b20088 0.55 -3.2
97,648 + SM_b20088 0.55 -1.0
97,648 + SM_b20088 0.55 +1.0
97,649 - SM_b20088 0.55 +0.6
97,651 + SM_b20088 0.55 -0.3
97,651 + SM_b20088 0.55 -1.4
97,730 + SM_b20088 0.59 -1.6
97,769 + SM_b20088 0.61 -1.0
97,931 + SM_b20088 0.69 -0.8
97,934 + SM_b20088 0.70 -1.6
97,934 + SM_b20088 0.70 -1.0
97,935 - SM_b20088 0.70 +1.1
97,946 + SM_b20088 0.70 +1.5
97,946 + SM_b20088 0.70 -0.7
97,947 - SM_b20088 0.70 -1.3
97,947 - SM_b20088 0.70 -0.2
97,947 - SM_b20088 0.70 -0.6
97,947 - SM_b20088 0.70 -0.3
97,950 - SM_b20088 0.70 +0.5
97,988 - SM_b20088 0.72 -0.7
97,988 - SM_b20088 0.72 +0.5
97,988 - SM_b20088 0.72 +1.3
98,286 + SM_b20088 0.87 -0.5
98,287 - SM_b20088 0.88 -1.3
98,405 + +1.0
98,493 + -1.3
98,493 + +0.3
98,494 - +0.5
98,494 - +0.0
98,553 + -1.2
98,554 - +0.4
98,554 - -0.7
98,800 - SM_b20089 0.77 -0.4
98,800 - SM_b20089 0.77 +1.2
98,853 + +1.3
98,854 - -0.2
98,854 - -2.6
98,855 + +1.3
98,856 - +1.0
98,880 + -0.6
99,180 + +0.5
99,192 - -0.1
99,404 + SM_b20091 0.43 +0.6
99,405 - SM_b20091 0.43 -1.0
99,489 + SM_b20091 0.60 -1.4
99,491 + SM_b20091 0.60 -2.2
99,491 + SM_b20091 0.60 +1.0
99,491 + SM_b20091 0.60 -1.0
99,492 - SM_b20091 0.60 -0.4
99,492 - SM_b20091 0.60 -0.8
99,503 + SM_b20091 0.63 +0.5
99,504 - SM_b20091 0.63 +0.8
99,507 + SM_b20091 0.63 -0.6

Or see this region's nucleotide sequence