Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20084 and SM_b20085 are separated by 51 nucleotides SM_b20085 and SM_b20086 are separated by 197 nucleotides SM_b20086 and SM_b20087 are separated by 22 nucleotides SM_b20087 and SM_b20088 are separated by 154 nucleotides
SM_b20084: SM_b20084 - hypothetical protein, at 94,903 to 95,076
_b20084
SM_b20085: SM_b20085 - hypothetical protein, at 95,128 to 95,274
_b20085
SM_b20086: SM_b20086 - hypothetical protein, at 95,472 to 95,774
_b20086
SM_b20087: SM_b20087 - hypothetical protein, at 95,797 to 96,402
_b20087
SM_b20088: SM_b20088 - hypothetical protein, at 96,557 to 98,533
_b20088
Position (kb) 95
96
97 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 94.829 kb on + strand at 94.830 kb on - strand at 94.856 kb on - strand at 94.904 kb on + strand at 94.904 kb on + strand at 94.957 kb on - strand, within SM_b20084 at 94.957 kb on - strand, within SM_b20084 at 94.957 kb on - strand, within SM_b20084 at 94.957 kb on - strand, within SM_b20084 at 94.970 kb on + strand, within SM_b20084 at 94.979 kb on - strand, within SM_b20084 at 95.036 kb on - strand, within SM_b20084 at 95.046 kb on + strand, within SM_b20084 at 95.046 kb on + strand, within SM_b20084 at 95.046 kb on + strand, within SM_b20084 at 95.058 kb on + strand, within SM_b20084 at 95.076 kb on + strand at 95.077 kb on - strand at 95.260 kb on + strand at 95.268 kb on + strand at 95.269 kb on - strand at 95.694 kb on - strand, within SM_b20086 at 95.694 kb on - strand, within SM_b20086 at 95.716 kb on - strand, within SM_b20086 at 95.762 kb on - strand at 95.828 kb on - strand at 95.887 kb on - strand, within SM_b20087 at 95.942 kb on + strand, within SM_b20087 at 95.942 kb on + strand, within SM_b20087 at 95.943 kb on - strand, within SM_b20087 at 96.029 kb on + strand, within SM_b20087 at 96.030 kb on - strand, within SM_b20087 at 96.281 kb on + strand, within SM_b20087 at 96.282 kb on - strand, within SM_b20087 at 96.303 kb on + strand, within SM_b20087 at 96.348 kb on + strand at 96.349 kb on - strand at 96.512 kb on + strand at 96.513 kb on - strand at 96.513 kb on - strand at 96.749 kb on + strand at 96.750 kb on - strand at 96.750 kb on - strand at 96.750 kb on - strand at 96.750 kb on - strand at 96.751 kb on + strand at 96.751 kb on + strand at 96.752 kb on - strand at 96.752 kb on - strand at 96.752 kb on - strand at 96.797 kb on - strand, within SM_b20088 at 96.860 kb on + strand, within SM_b20088 at 96.860 kb on + strand, within SM_b20088 at 96.860 kb on + strand, within SM_b20088 at 96.861 kb on - strand, within SM_b20088 at 96.861 kb on - strand, within SM_b20088 at 96.861 kb on - strand, within SM_b20088 at 96.861 kb on - strand, within SM_b20088 at 96.861 kb on - strand, within SM_b20088 at 96.866 kb on + strand, within SM_b20088 at 96.867 kb on - strand, within SM_b20088 at 96.868 kb on + strand, within SM_b20088 at 96.869 kb on - strand, within SM_b20088 at 96.937 kb on + strand, within SM_b20088 at 96.937 kb on + strand, within SM_b20088 at 96.938 kb on - strand, within SM_b20088 at 96.999 kb on + strand, within SM_b20088 at 97.026 kb on + strand, within SM_b20088 at 97.187 kb on + strand, within SM_b20088
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 94,829 + -1.7 94,830 - +0.5 94,856 - +0.9 94,904 + +0.3 94,904 + +2.8 94,957 - SM_b20084 0.31 -0.4 94,957 - SM_b20084 0.31 +0.8 94,957 - SM_b20084 0.31 +1.6 94,957 - SM_b20084 0.31 -0.1 94,970 + SM_b20084 0.39 -1.6 94,979 - SM_b20084 0.44 +0.8 95,036 - SM_b20084 0.76 -0.1 95,046 + SM_b20084 0.82 -2.5 95,046 + SM_b20084 0.82 -4.0 95,046 + SM_b20084 0.82 +0.6 95,058 + SM_b20084 0.89 -0.3 95,076 + -1.0 95,077 - +0.4 95,260 + -0.6 95,268 + +0.3 95,269 - -0.4 95,694 - SM_b20086 0.73 -0.4 95,694 - SM_b20086 0.73 +0.0 95,716 - SM_b20086 0.81 +1.0 95,762 - +0.0 95,828 - +0.4 95,887 - SM_b20087 0.15 -2.3 95,942 + SM_b20087 0.24 -4.0 95,942 + SM_b20087 0.24 -0.1 95,943 - SM_b20087 0.24 +0.5 96,029 + SM_b20087 0.38 +2.2 96,030 - SM_b20087 0.38 -3.3 96,281 + SM_b20087 0.80 +2.0 96,282 - SM_b20087 0.80 +2.8 96,303 + SM_b20087 0.83 -3.5 96,348 + +0.1 96,349 - -0.4 96,512 + -0.3 96,513 - -0.9 96,513 - +1.0 96,749 + +1.1 96,750 - -0.6 96,750 - +0.0 96,750 - -0.2 96,750 - +1.7 96,751 + -3.2 96,751 + -1.6 96,752 - -0.1 96,752 - -0.6 96,752 - -0.9 96,797 - SM_b20088 0.12 +0.1 96,860 + SM_b20088 0.15 +1.9 96,860 + SM_b20088 0.15 -1.3 96,860 + SM_b20088 0.15 -1.4 96,861 - SM_b20088 0.15 -0.4 96,861 - SM_b20088 0.15 -1.0 96,861 - SM_b20088 0.15 +2.3 96,861 - SM_b20088 0.15 -1.0 96,861 - SM_b20088 0.15 +1.3 96,866 + SM_b20088 0.16 -1.9 96,867 - SM_b20088 0.16 -1.9 96,868 + SM_b20088 0.16 -0.2 96,869 - SM_b20088 0.16 -0.6 96,937 + SM_b20088 0.19 +1.0 96,937 + SM_b20088 0.19 +0.4 96,938 - SM_b20088 0.19 +0.1 96,999 + SM_b20088 0.22 -0.6 97,026 + SM_b20088 0.24 +0.2 97,187 + SM_b20088 0.32 -0.4
Or see this region's nucleotide sequence