Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20077 and SM_b20078 overlap by 1 nucleotides SM_b20078 and SM_b20079 are separated by 832 nucleotides
SM_b20077: SM_b20077 - sensor histidine kinase, at 85,081 to 86,745
_b20077
SM_b20078: SM_b20078 - response regulator, at 86,745 to 87,380
_b20078
SM_b20079: SM_b20079 - hemolysin-adenlyate cyclase, at 88,213 to 91,431
_b20079
Position (kb)
86
87
88 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 85.826 kb on - strand, within SM_b20077 at 86.136 kb on + strand, within SM_b20077 at 86.445 kb on + strand, within SM_b20077 at 86.445 kb on + strand, within SM_b20077 at 86.446 kb on - strand, within SM_b20077 at 86.446 kb on - strand, within SM_b20077 at 86.446 kb on - strand, within SM_b20077 at 86.446 kb on - strand, within SM_b20077 at 86.446 kb on - strand, within SM_b20077 at 86.477 kb on - strand, within SM_b20077 at 86.484 kb on - strand, within SM_b20077 at 86.540 kb on + strand, within SM_b20077 at 86.872 kb on + strand, within SM_b20078 at 86.872 kb on + strand, within SM_b20078 at 87.060 kb on + strand, within SM_b20078 at 87.060 kb on + strand, within SM_b20078 at 87.060 kb on + strand, within SM_b20078 at 87.061 kb on - strand, within SM_b20078 at 87.188 kb on + strand, within SM_b20078 at 87.275 kb on + strand, within SM_b20078 at 87.276 kb on - strand, within SM_b20078 at 87.357 kb on + strand at 87.437 kb on + strand at 87.542 kb on - strand at 87.542 kb on - strand at 87.553 kb on + strand at 87.612 kb on + strand at 87.618 kb on + strand at 87.618 kb on + strand at 87.618 kb on + strand at 87.619 kb on - strand at 87.619 kb on - strand at 87.625 kb on - strand at 87.625 kb on - strand at 87.625 kb on - strand at 87.642 kb on + strand at 87.748 kb on - strand at 87.750 kb on - strand at 87.759 kb on + strand at 87.759 kb on + strand at 87.759 kb on + strand at 87.759 kb on + strand at 87.759 kb on + strand at 87.761 kb on + strand at 87.762 kb on - strand at 87.762 kb on - strand at 87.762 kb on - strand at 87.927 kb on + strand at 88.010 kb on + strand at 88.010 kb on + strand at 88.011 kb on - strand at 88.011 kb on - strand at 88.012 kb on + strand at 88.049 kb on + strand at 88.049 kb on + strand at 88.049 kb on + strand at 88.049 kb on + strand at 88.050 kb on - strand at 88.140 kb on - strand at 88.199 kb on - strand at 88.254 kb on - strand at 88.254 kb on - strand at 88.265 kb on + strand at 88.364 kb on - strand at 88.364 kb on - strand at 88.364 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 85,826 - SM_b20077 0.45 -3.0 86,136 + SM_b20077 0.63 +1.2 86,445 + SM_b20077 0.82 +0.3 86,445 + SM_b20077 0.82 -2.4 86,446 - SM_b20077 0.82 -2.3 86,446 - SM_b20077 0.82 -3.1 86,446 - SM_b20077 0.82 +0.3 86,446 - SM_b20077 0.82 -1.8 86,446 - SM_b20077 0.82 +0.7 86,477 - SM_b20077 0.84 -2.2 86,484 - SM_b20077 0.84 +1.2 86,540 + SM_b20077 0.88 +0.6 86,872 + SM_b20078 0.20 -0.8 86,872 + SM_b20078 0.20 -1.8 87,060 + SM_b20078 0.50 +0.2 87,060 + SM_b20078 0.50 +0.9 87,060 + SM_b20078 0.50 -1.0 87,061 - SM_b20078 0.50 -3.2 87,188 + SM_b20078 0.70 -2.0 87,275 + SM_b20078 0.83 -0.1 87,276 - SM_b20078 0.83 +4.5 87,357 + -0.5 87,437 + +0.5 87,542 - +1.4 87,542 - +0.3 87,553 + -0.9 87,612 + +1.7 87,618 + +0.2 87,618 + +1.0 87,618 + -0.3 87,619 - -2.0 87,619 - -1.6 87,625 - +1.2 87,625 - -0.1 87,625 - -2.2 87,642 + -0.6 87,748 - +0.6 87,750 - -1.3 87,759 + -1.0 87,759 + -2.5 87,759 + -2.8 87,759 + +0.5 87,759 + -0.9 87,761 + -2.5 87,762 - +2.0 87,762 - -0.5 87,762 - +1.0 87,927 + -3.2 88,010 + -0.7 88,010 + +1.4 88,011 - +0.1 88,011 - -2.4 88,012 + +0.6 88,049 + -1.0 88,049 + +0.0 88,049 + -0.5 88,049 + +1.2 88,050 - +2.5 88,140 - -1.3 88,199 - +0.7 88,254 - -0.5 88,254 - -3.7 88,265 + +2.2 88,364 - -0.7 88,364 - +0.2 88,364 - -0.9
Or see this region's nucleotide sequence