Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20076 and SM_b20077 are separated by 99 nucleotides SM_b20077 and SM_b20078 overlap by 1 nucleotides
SM_b20076: SM_b20076 - short-chain dehydrogenase, at 83,965 to 84,981
_b20076
SM_b20077: SM_b20077 - sensor histidine kinase, at 85,081 to 86,745
_b20077
SM_b20078: SM_b20078 - response regulator, at 86,745 to 87,380
_b20078
Position (kb) 85
86
87 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 84.215 kb on + strand, within SM_b20076 at 84.517 kb on + strand, within SM_b20076 at 84.562 kb on + strand, within SM_b20076 at 84.563 kb on - strand, within SM_b20076 at 84.598 kb on + strand, within SM_b20076 at 84.598 kb on + strand, within SM_b20076 at 84.599 kb on - strand, within SM_b20076 at 85.032 kb on + strand at 85.033 kb on - strand at 85.033 kb on - strand at 85.035 kb on + strand at 85.035 kb on + strand at 85.035 kb on + strand at 85.036 kb on - strand at 85.036 kb on - strand at 85.036 kb on - strand at 85.384 kb on - strand, within SM_b20077 at 85.384 kb on - strand, within SM_b20077 at 85.606 kb on + strand, within SM_b20077 at 85.606 kb on + strand, within SM_b20077 at 85.607 kb on - strand, within SM_b20077 at 85.607 kb on - strand, within SM_b20077 at 85.607 kb on - strand, within SM_b20077 at 85.826 kb on - strand, within SM_b20077 at 86.136 kb on + strand, within SM_b20077 at 86.445 kb on + strand, within SM_b20077 at 86.445 kb on + strand, within SM_b20077 at 86.446 kb on - strand, within SM_b20077 at 86.446 kb on - strand, within SM_b20077 at 86.446 kb on - strand, within SM_b20077 at 86.446 kb on - strand, within SM_b20077 at 86.446 kb on - strand, within SM_b20077 at 86.477 kb on - strand, within SM_b20077 at 86.484 kb on - strand, within SM_b20077 at 86.540 kb on + strand, within SM_b20077 at 86.872 kb on + strand, within SM_b20078 at 86.872 kb on + strand, within SM_b20078 at 87.060 kb on + strand, within SM_b20078 at 87.060 kb on + strand, within SM_b20078 at 87.060 kb on + strand, within SM_b20078 at 87.061 kb on - strand, within SM_b20078 at 87.188 kb on + strand, within SM_b20078 at 87.275 kb on + strand, within SM_b20078 at 87.276 kb on - strand, within SM_b20078 at 87.357 kb on + strand at 87.437 kb on + strand at 87.542 kb on - strand at 87.542 kb on - strand at 87.553 kb on + strand at 87.612 kb on + strand at 87.618 kb on + strand at 87.618 kb on + strand at 87.618 kb on + strand at 87.619 kb on - strand at 87.619 kb on - strand at 87.625 kb on - strand at 87.625 kb on - strand at 87.625 kb on - strand at 87.642 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 84,215 + SM_b20076 0.25 -2.8 84,517 + SM_b20076 0.54 -0.8 84,562 + SM_b20076 0.59 +1.0 84,563 - SM_b20076 0.59 +0.1 84,598 + SM_b20076 0.62 +1.5 84,598 + SM_b20076 0.62 -0.6 84,599 - SM_b20076 0.62 +0.8 85,032 + +0.6 85,033 - -1.3 85,033 - -1.5 85,035 + +1.6 85,035 + +0.8 85,035 + -0.5 85,036 - -1.0 85,036 - -0.9 85,036 - +0.7 85,384 - SM_b20077 0.18 +0.2 85,384 - SM_b20077 0.18 +0.4 85,606 + SM_b20077 0.32 +0.1 85,606 + SM_b20077 0.32 -0.7 85,607 - SM_b20077 0.32 -0.5 85,607 - SM_b20077 0.32 -0.3 85,607 - SM_b20077 0.32 -0.3 85,826 - SM_b20077 0.45 -3.0 86,136 + SM_b20077 0.63 +1.2 86,445 + SM_b20077 0.82 +0.3 86,445 + SM_b20077 0.82 -2.4 86,446 - SM_b20077 0.82 -2.3 86,446 - SM_b20077 0.82 -3.1 86,446 - SM_b20077 0.82 +0.3 86,446 - SM_b20077 0.82 -1.8 86,446 - SM_b20077 0.82 +0.7 86,477 - SM_b20077 0.84 -2.2 86,484 - SM_b20077 0.84 +1.2 86,540 + SM_b20077 0.88 +0.6 86,872 + SM_b20078 0.20 -0.8 86,872 + SM_b20078 0.20 -1.8 87,060 + SM_b20078 0.50 +0.2 87,060 + SM_b20078 0.50 +0.9 87,060 + SM_b20078 0.50 -1.0 87,061 - SM_b20078 0.50 -3.2 87,188 + SM_b20078 0.70 -2.0 87,275 + SM_b20078 0.83 -0.1 87,276 - SM_b20078 0.83 +4.5 87,357 + -0.5 87,437 + +0.5 87,542 - +1.4 87,542 - +0.3 87,553 + -0.9 87,612 + +1.7 87,618 + +0.2 87,618 + +1.0 87,618 + -0.3 87,619 - -2.0 87,619 - -1.6 87,625 - +1.2 87,625 - -0.1 87,625 - -2.2 87,642 + -0.6
Or see this region's nucleotide sequence