Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20058 and SM_b20059 are separated by 3 nucleotides SM_b20059 and SM_b20060 are separated by 91 nucleotides SM_b20060 and SM_b22003 are separated by 158 nucleotides SM_b22003 and SM_b20061 are separated by 160 nucleotides SM_b20061 and SM_b20062 are separated by 103 nucleotides
SM_b20058: SM_b20058 - ABC transporter ATP-binding protein, at 68,748 to 69,548
_b20058
SM_b20059: SM_b20059 - SAM-dependent methyltransferase, at 69,552 to 70,331
_b20059
SM_b20060: SM_b20060 - ISRm5 transposase, at 70,423 to 71,619
_b20060
SM_b22003: SM_b22003 - hypothetical protein, at 71,778 to 72,098
_b22003
SM_b20061: SM_b20061 - hypothetical protein, at 72,259 to 72,414
_b20061
SM_b20062: SM_b20062 - hypothetical protein, at 72,518 to 72,766
_b20062
Position (kb)
70
71
72 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 69.594 kb on + strand at 69.595 kb on - strand at 69.857 kb on - strand, within SM_b20059 at 69.897 kb on + strand, within SM_b20059 at 69.897 kb on + strand, within SM_b20059 at 69.898 kb on - strand, within SM_b20059 at 69.898 kb on - strand, within SM_b20059 at 69.898 kb on - strand, within SM_b20059 at 70.096 kb on - strand, within SM_b20059 at 70.210 kb on + strand, within SM_b20059 at 70.210 kb on + strand, within SM_b20059 at 70.210 kb on + strand, within SM_b20059 at 70.330 kb on - strand at 71.693 kb on - strand at 71.755 kb on + strand at 71.756 kb on - strand at 71.756 kb on - strand at 71.792 kb on + strand at 71.792 kb on + strand at 71.811 kb on + strand, within SM_b22003 at 71.811 kb on + strand, within SM_b22003 at 71.811 kb on + strand, within SM_b22003 at 71.812 kb on - strand, within SM_b22003 at 71.881 kb on + strand, within SM_b22003 at 71.882 kb on - strand, within SM_b22003 at 71.882 kb on - strand, within SM_b22003 at 71.882 kb on - strand, within SM_b22003 at 71.882 kb on - strand, within SM_b22003 at 71.950 kb on + strand, within SM_b22003 at 71.988 kb on + strand, within SM_b22003 at 71.989 kb on - strand, within SM_b22003 at 72.103 kb on - strand at 72.103 kb on - strand at 72.108 kb on + strand at 72.151 kb on + strand at 72.152 kb on - strand at 72.218 kb on + strand at 72.218 kb on + strand at 72.218 kb on + strand at 72.218 kb on + strand at 72.218 kb on + strand at 72.219 kb on - strand at 72.271 kb on + strand at 72.271 kb on + strand at 72.432 kb on + strand at 72.432 kb on + strand at 72.432 kb on + strand at 72.432 kb on + strand at 72.432 kb on + strand at 72.432 kb on + strand at 72.444 kb on - strand at 72.512 kb on - strand at 72.512 kb on - strand at 72.512 kb on - strand at 72.512 kb on - strand at 72.539 kb on - strand at 72.539 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 69,594 + -1.6 69,595 - -0.1 69,857 - SM_b20059 0.39 -3.5 69,897 + SM_b20059 0.44 -1.0 69,897 + SM_b20059 0.44 +0.1 69,898 - SM_b20059 0.44 -0.4 69,898 - SM_b20059 0.44 -0.1 69,898 - SM_b20059 0.44 +0.4 70,096 - SM_b20059 0.70 +1.8 70,210 + SM_b20059 0.84 +0.3 70,210 + SM_b20059 0.84 +0.6 70,210 + SM_b20059 0.84 +1.5 70,330 - +0.3 71,693 - +0.0 71,755 + -3.6 71,756 - +1.0 71,756 - -2.7 71,792 + -1.0 71,792 + +1.0 71,811 + SM_b22003 0.10 +0.1 71,811 + SM_b22003 0.10 -0.3 71,811 + SM_b22003 0.10 -0.6 71,812 - SM_b22003 0.11 +1.7 71,881 + SM_b22003 0.32 +1.0 71,882 - SM_b22003 0.32 +0.0 71,882 - SM_b22003 0.32 +0.3 71,882 - SM_b22003 0.32 -1.2 71,882 - SM_b22003 0.32 +1.0 71,950 + SM_b22003 0.54 -0.2 71,988 + SM_b22003 0.65 +1.0 71,989 - SM_b22003 0.66 -2.7 72,103 - -1.0 72,103 - -0.7 72,108 + -2.2 72,151 + +1.0 72,152 - -1.8 72,218 + -1.2 72,218 + +1.0 72,218 + -0.3 72,218 + +0.5 72,218 + -2.1 72,219 - +0.3 72,271 + -3.2 72,271 + +0.7 72,432 + -2.9 72,432 + +1.0 72,432 + -0.3 72,432 + -0.1 72,432 + +0.5 72,432 + -3.3 72,444 - +0.0 72,512 - +0.0 72,512 - +1.9 72,512 - +3.3 72,512 - -0.4 72,539 - -1.7 72,539 - +0.4
Or see this region's nucleotide sequence