Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20040 and SM_b20041 are separated by 190 nucleotides SM_b20041 and SM_b20042 are separated by 22 nucleotides SM_b20042 and SM_b20043 are separated by 373 nucleotides
SM_b20040: SM_b20040 - hypothetical protein, at 50,652 to 51,512
_b20040
SM_b20041: SM_b20041 - hypothetical protein, at 51,703 to 52,233
_b20041
SM_b20042: SM_b20042 - hypothetical protein, at 52,256 to 53,413
_b20042
SM_b20043: SM_b20043 - hypothetical protein, at 53,787 to 54,629
_b20043
Position (kb) 52
53
54 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 51.696 kb on + strand at 51.696 kb on + strand at 51.696 kb on + strand at 51.697 kb on - strand at 51.720 kb on - strand at 51.770 kb on + strand, within SM_b20041 at 51.925 kb on - strand, within SM_b20041 at 52.002 kb on + strand, within SM_b20041 at 52.012 kb on + strand, within SM_b20041 at 52.012 kb on + strand, within SM_b20041 at 52.012 kb on + strand, within SM_b20041 at 52.013 kb on - strand, within SM_b20041 at 52.165 kb on - strand, within SM_b20041 at 52.165 kb on - strand, within SM_b20041 at 52.606 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 53.213 kb on + strand, within SM_b20042 at 53.407 kb on - strand at 53.475 kb on + strand at 53.476 kb on - strand at 53.496 kb on + strand at 53.496 kb on + strand at 53.497 kb on - strand at 53.568 kb on + strand at 53.579 kb on + strand at 53.579 kb on + strand at 53.830 kb on + strand at 53.830 kb on + strand at 53.830 kb on + strand at 53.831 kb on - strand at 53.831 kb on - strand at 53.831 kb on - strand at 53.831 kb on - strand at 53.837 kb on + strand at 53.840 kb on - strand at 53.857 kb on - strand at 53.942 kb on + strand, within SM_b20043 at 53.942 kb on + strand, within SM_b20043 at 53.943 kb on - strand, within SM_b20043 at 54.014 kb on + strand, within SM_b20043 at 54.015 kb on - strand, within SM_b20043 at 54.015 kb on - strand, within SM_b20043 at 54.033 kb on - strand, within SM_b20043 at 54.177 kb on - strand, within SM_b20043 at 54.208 kb on + strand, within SM_b20043 at 54.232 kb on + strand, within SM_b20043 at 54.232 kb on + strand, within SM_b20043 at 54.286 kb on - strand, within SM_b20043 at 54.400 kb on - strand, within SM_b20043 at 54.400 kb on - strand, within SM_b20043 at 54.400 kb on - strand, within SM_b20043
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 51,696 + -2.3 51,696 + -0.4 51,696 + +2.2 51,697 - -1.7 51,720 - +2.1 51,770 + SM_b20041 0.13 +0.4 51,925 - SM_b20041 0.42 -0.9 52,002 + SM_b20041 0.56 -1.8 52,012 + SM_b20041 0.58 -1.3 52,012 + SM_b20041 0.58 -2.2 52,012 + SM_b20041 0.58 -0.8 52,013 - SM_b20041 0.58 -1.6 52,165 - SM_b20041 0.87 -0.6 52,165 - SM_b20041 0.87 +1.0 52,606 - SM_b20042 0.30 -1.3 52,700 - SM_b20042 0.38 -1.2 52,700 - SM_b20042 0.38 -0.2 52,700 - SM_b20042 0.38 -0.4 52,700 - SM_b20042 0.38 -4.1 52,700 - SM_b20042 0.38 +1.0 53,213 + SM_b20042 0.83 +1.0 53,407 - +0.4 53,475 + +2.2 53,476 - -0.2 53,496 + -0.1 53,496 + -1.9 53,497 - -1.3 53,568 + -0.8 53,579 + -1.8 53,579 + -2.2 53,830 + +1.0 53,830 + -2.2 53,830 + +1.1 53,831 - +1.1 53,831 - -3.5 53,831 - +1.2 53,831 - +1.8 53,837 + +1.5 53,840 - +0.6 53,857 - +1.1 53,942 + SM_b20043 0.18 -0.2 53,942 + SM_b20043 0.18 +3.0 53,943 - SM_b20043 0.19 +0.9 54,014 + SM_b20043 0.27 -1.7 54,015 - SM_b20043 0.27 +1.5 54,015 - SM_b20043 0.27 +2.3 54,033 - SM_b20043 0.29 +1.0 54,177 - SM_b20043 0.46 -2.9 54,208 + SM_b20043 0.50 -1.8 54,232 + SM_b20043 0.53 +2.3 54,232 + SM_b20043 0.53 -4.5 54,286 - SM_b20043 0.59 +0.7 54,400 - SM_b20043 0.73 -1.0 54,400 - SM_b20043 0.73 +0.9 54,400 - SM_b20043 0.73 -0.6
Or see this region's nucleotide sequence