Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20037 and SM_b20038 are separated by 216 nucleotides SM_b20038 and SM_b20039 are separated by 96 nucleotides SM_b20039 and SM_b20040 are separated by 81 nucleotides
SM_b20037: SM_b20037 - shikimate 5-dehydrogenase, at 47,745 to 48,605
_b20037
SM_b20038: SM_b20038 - hypothetical protein, at 48,822 to 49,049
_b20038
SM_b20039: SM_b20039 - transcriptional regulator, at 49,146 to 50,570
_b20039
SM_b20040: SM_b20040 - hypothetical protein, at 50,652 to 51,512
_b20040
Position (kb)
49
50
51 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 48.184 kb on - strand, within SM_b20037 at 48.184 kb on - strand, within SM_b20037 at 48.373 kb on - strand, within SM_b20037 at 48.436 kb on - strand, within SM_b20037 at 48.646 kb on + strand at 48.646 kb on + strand at 48.791 kb on - strand at 48.791 kb on - strand at 48.799 kb on + strand at 48.800 kb on - strand at 48.804 kb on + strand at 48.805 kb on - strand at 48.805 kb on - strand at 48.805 kb on - strand at 49.143 kb on - strand at 49.143 kb on - strand at 49.147 kb on + strand at 49.147 kb on + strand at 49.456 kb on + strand, within SM_b20039 at 49.618 kb on - strand, within SM_b20039 at 49.618 kb on - strand, within SM_b20039 at 49.800 kb on - strand, within SM_b20039 at 49.804 kb on + strand, within SM_b20039 at 49.804 kb on + strand, within SM_b20039 at 49.805 kb on - strand, within SM_b20039 at 49.805 kb on - strand, within SM_b20039 at 49.805 kb on - strand, within SM_b20039 at 49.868 kb on + strand, within SM_b20039 at 49.868 kb on + strand, within SM_b20039 at 49.870 kb on + strand, within SM_b20039 at 49.870 kb on + strand, within SM_b20039 at 49.871 kb on - strand, within SM_b20039 at 49.871 kb on - strand, within SM_b20039 at 49.927 kb on + strand, within SM_b20039 at 49.927 kb on + strand, within SM_b20039 at 49.928 kb on - strand, within SM_b20039 at 50.020 kb on - strand, within SM_b20039 at 50.020 kb on - strand, within SM_b20039 at 50.108 kb on - strand, within SM_b20039 at 50.388 kb on + strand, within SM_b20039 at 50.651 kb on + strand at 50.753 kb on + strand, within SM_b20040 at 50.754 kb on - strand, within SM_b20040 at 50.898 kb on - strand, within SM_b20040 at 51.136 kb on + strand, within SM_b20040
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 48,184 - SM_b20037 0.51 -0.0 48,184 - SM_b20037 0.51 +0.9 48,373 - SM_b20037 0.73 -2.1 48,436 - SM_b20037 0.80 +1.1 48,646 + +1.0 48,646 + +1.0 48,791 - -0.3 48,791 - -1.6 48,799 + +1.2 48,800 - -0.1 48,804 + -0.3 48,805 - +0.1 48,805 - +1.2 48,805 - +0.3 49,143 - +0.1 49,143 - +0.5 49,147 + +1.4 49,147 + -0.5 49,456 + SM_b20039 0.22 +1.1 49,618 - SM_b20039 0.33 +0.3 49,618 - SM_b20039 0.33 +1.5 49,800 - SM_b20039 0.46 +1.0 49,804 + SM_b20039 0.46 -1.5 49,804 + SM_b20039 0.46 +0.0 49,805 - SM_b20039 0.46 -1.7 49,805 - SM_b20039 0.46 +0.4 49,805 - SM_b20039 0.46 -1.6 49,868 + SM_b20039 0.51 +0.4 49,868 + SM_b20039 0.51 +3.4 49,870 + SM_b20039 0.51 +0.1 49,870 + SM_b20039 0.51 +0.4 49,871 - SM_b20039 0.51 +3.1 49,871 - SM_b20039 0.51 +0.7 49,927 + SM_b20039 0.55 -3.9 49,927 + SM_b20039 0.55 -1.7 49,928 - SM_b20039 0.55 -2.7 50,020 - SM_b20039 0.61 -0.7 50,020 - SM_b20039 0.61 +0.7 50,108 - SM_b20039 0.68 +0.6 50,388 + SM_b20039 0.87 +1.1 50,651 + -3.2 50,753 + SM_b20040 0.12 +0.4 50,754 - SM_b20040 0.12 +0.5 50,898 - SM_b20040 0.29 -0.5 51,136 + SM_b20040 0.56 -2.3
Or see this region's nucleotide sequence