Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20035

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20033 and SM_b20034 are separated by 296 nucleotidesSM_b20034 and SM_b20035 are separated by 10 nucleotidesSM_b20035 and SM_b20036 are separated by 60 nucleotides SM_b20033: SM_b20033 - transcriptional regulator, at 43,775 to 44,437 _b20033 SM_b20034: SM_b20034 - ABC transporter, at 44,734 to 45,297 _b20034 SM_b20035: SM_b20035 - ABC transporter permease, at 45,308 to 46,588 _b20035 SM_b20036: SM_b20036 - ABC transporter substrate-binding protein, at 46,649 to 47,665 _b20036 Position (kb) 45 46 47Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 44.541 kb on + strandat 44.541 kb on + strandat 44.542 kb on - strandat 44.542 kb on - strandat 44.856 kb on - strand, within SM_b20034at 45.016 kb on - strand, within SM_b20034at 45.016 kb on - strand, within SM_b20034at 45.022 kb on + strand, within SM_b20034at 45.023 kb on - strand, within SM_b20034at 45.023 kb on - strand, within SM_b20034at 45.023 kb on - strand, within SM_b20034at 45.315 kb on + strandat 45.315 kb on + strandat 45.407 kb on + strandat 45.408 kb on - strandat 45.408 kb on - strandat 45.518 kb on - strand, within SM_b20035at 45.756 kb on + strand, within SM_b20035at 45.756 kb on + strand, within SM_b20035at 45.757 kb on - strand, within SM_b20035at 45.831 kb on + strand, within SM_b20035at 45.832 kb on - strand, within SM_b20035at 45.832 kb on - strand, within SM_b20035at 45.906 kb on + strand, within SM_b20035at 46.047 kb on - strand, within SM_b20035at 46.047 kb on - strand, within SM_b20035at 46.047 kb on - strand, within SM_b20035at 46.255 kb on + strand, within SM_b20035at 46.373 kb on + strandat 46.608 kb on - strandat 47.151 kb on + strand, within SM_b20036at 47.152 kb on - strand, within SM_b20036at 47.238 kb on - strand, within SM_b20036at 47.239 kb on + strand, within SM_b20036at 47.249 kb on + strand, within SM_b20036at 47.250 kb on - strand, within SM_b20036at 47.250 kb on - strand, within SM_b20036at 47.250 kb on - strand, within SM_b20036at 47.251 kb on + strand, within SM_b20036at 47.251 kb on + strand, within SM_b20036at 47.252 kb on - strand, within SM_b20036at 47.336 kb on + strand, within SM_b20036at 47.337 kb on - strand, within SM_b20036at 47.337 kb on - strand, within SM_b20036at 47.360 kb on + strand, within SM_b20036at 47.361 kb on - strand, within SM_b20036

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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44,541 + -0.4
44,541 + -0.6
44,542 - -0.6
44,542 - -1.6
44,856 - SM_b20034 0.22 +0.3
45,016 - SM_b20034 0.50 +2.2
45,016 - SM_b20034 0.50 -1.9
45,022 + SM_b20034 0.51 -1.0
45,023 - SM_b20034 0.51 -2.0
45,023 - SM_b20034 0.51 -1.0
45,023 - SM_b20034 0.51 +0.8
45,315 + -0.9
45,315 + +0.8
45,407 + -2.3
45,408 - -2.5
45,408 - -0.7
45,518 - SM_b20035 0.16 +0.1
45,756 + SM_b20035 0.35 -0.9
45,756 + SM_b20035 0.35 -3.1
45,757 - SM_b20035 0.35 -4.4
45,831 + SM_b20035 0.41 -1.1
45,832 - SM_b20035 0.41 -2.5
45,832 - SM_b20035 0.41 -0.1
45,906 + SM_b20035 0.47 +0.3
46,047 - SM_b20035 0.58 -1.4
46,047 - SM_b20035 0.58 -3.0
46,047 - SM_b20035 0.58 -0.2
46,255 + SM_b20035 0.74 +0.2
46,373 + +2.0
46,608 - +0.2
47,151 + SM_b20036 0.49 -0.4
47,152 - SM_b20036 0.49 -0.4
47,238 - SM_b20036 0.58 +0.6
47,239 + SM_b20036 0.58 +1.7
47,249 + SM_b20036 0.59 +0.4
47,250 - SM_b20036 0.59 -1.8
47,250 - SM_b20036 0.59 +1.3
47,250 - SM_b20036 0.59 -1.6
47,251 + SM_b20036 0.59 -2.7
47,251 + SM_b20036 0.59 -1.5
47,252 - SM_b20036 0.59 -0.5
47,336 + SM_b20036 0.68 -0.3
47,337 - SM_b20036 0.68 -0.5
47,337 - SM_b20036 0.68 -0.3
47,360 + SM_b20036 0.70 -0.9
47,361 - SM_b20036 0.70 -0.5

Or see this region's nucleotide sequence