Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20009 and SM_b20010 are separated by 94 nucleotides SM_b20010 and SM_b20011 are separated by 226 nucleotides
SM_b20009: SM_b20009 - transcriptional regulator, at 13,351 to 14,280
_b20009
SM_b20010: SM_b20010 - hypothetical protein, at 14,375 to 15,442
_b20010
SM_b20011: SM_b20011 - hypothetical protein, at 15,669 to 16,448
_b20011
Position (kb) 14
15
16 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 13.399 kb on - strand at 13.551 kb on + strand, within SM_b20009 at 13.551 kb on + strand, within SM_b20009 at 13.552 kb on - strand, within SM_b20009 at 13.561 kb on + strand, within SM_b20009 at 13.846 kb on + strand, within SM_b20009 at 13.847 kb on - strand, within SM_b20009 at 13.847 kb on - strand, within SM_b20009 at 13.973 kb on + strand, within SM_b20009 at 14.229 kb on + strand at 14.230 kb on - strand at 14.230 kb on - strand at 14.263 kb on + strand at 14.264 kb on - strand at 14.264 kb on - strand at 14.340 kb on + strand at 14.369 kb on - strand at 14.655 kb on - strand, within SM_b20010 at 14.676 kb on - strand, within SM_b20010 at 14.734 kb on + strand, within SM_b20010 at 14.735 kb on - strand, within SM_b20010 at 15.441 kb on - strand at 15.470 kb on + strand at 15.470 kb on + strand at 15.470 kb on + strand at 15.675 kb on - strand at 15.906 kb on + strand, within SM_b20011 at 15.907 kb on - strand, within SM_b20011 at 15.907 kb on - strand, within SM_b20011 at 15.908 kb on + strand, within SM_b20011 at 15.908 kb on + strand, within SM_b20011 at 15.909 kb on - strand, within SM_b20011 at 16.301 kb on + strand, within SM_b20011
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 13,399 - +0.5 13,551 + SM_b20009 0.22 +1.0 13,551 + SM_b20009 0.22 -3.2 13,552 - SM_b20009 0.22 -0.2 13,561 + SM_b20009 0.23 +1.9 13,846 + SM_b20009 0.53 +0.7 13,847 - SM_b20009 0.53 -3.1 13,847 - SM_b20009 0.53 -0.0 13,973 + SM_b20009 0.67 +0.2 14,229 + -0.1 14,230 - -0.6 14,230 - +0.0 14,263 + +0.6 14,264 - -2.7 14,264 - -1.2 14,340 + -1.7 14,369 - -0.1 14,655 - SM_b20010 0.26 +0.8 14,676 - SM_b20010 0.28 +0.0 14,734 + SM_b20010 0.34 -0.4 14,735 - SM_b20010 0.34 +1.0 15,441 - -0.2 15,470 + -2.0 15,470 + +0.2 15,470 + +1.1 15,675 - +3.0 15,906 + SM_b20011 0.30 +0.1 15,907 - SM_b20011 0.31 -2.2 15,907 - SM_b20011 0.31 -3.0 15,908 + SM_b20011 0.31 -3.9 15,908 + SM_b20011 0.31 +1.3 15,909 - SM_b20011 0.31 +4.7 16,301 + SM_b20011 0.81 +0.5
Or see this region's nucleotide sequence