Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20006 and SM_b20007 are separated by 114 nucleotides SM_b20007 and SM_b20008 are separated by 25 nucleotides
SM_b20006: SM_b20006 - hypothetical protein, at 9,086 to 10,039
_b20006
SM_b20007: SM_b20007 - catalase C protein, at 10,154 to 12,271
_b20007
SM_b20008: SM_b20008 - ATP-dependent DNA ligase, at 12,297 to 13,364
_b20008
Position (kb)
10
11
12
13 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 9.500 kb on - strand, within SM_b20006 at 9.561 kb on - strand, within SM_b20006 at 9.695 kb on + strand, within SM_b20006 at 10.009 kb on - strand at 10.078 kb on - strand at 10.183 kb on + strand at 10.183 kb on + strand at 10.339 kb on + strand at 10.428 kb on - strand, within SM_b20007 at 10.686 kb on + strand, within SM_b20007 at 10.686 kb on + strand, within SM_b20007 at 10.686 kb on + strand, within SM_b20007 at 10.687 kb on - strand, within SM_b20007 at 10.687 kb on - strand, within SM_b20007 at 10.687 kb on - strand, within SM_b20007 at 10.695 kb on + strand, within SM_b20007 at 10.696 kb on - strand, within SM_b20007 at 11.277 kb on - strand, within SM_b20007 at 11.412 kb on - strand, within SM_b20007 at 11.531 kb on + strand, within SM_b20007 at 11.532 kb on - strand, within SM_b20007 at 11.995 kb on - strand, within SM_b20007 at 12.101 kb on + strand at 12.101 kb on + strand at 12.102 kb on - strand at 12.102 kb on - strand at 12.102 kb on - strand at 12.103 kb on + strand at 12.104 kb on - strand at 12.226 kb on + strand at 12.226 kb on + strand at 12.283 kb on - strand at 12.444 kb on + strand, within SM_b20008 at 12.445 kb on - strand, within SM_b20008 at 12.445 kb on - strand, within SM_b20008 at 12.503 kb on + strand, within SM_b20008 at 12.503 kb on + strand, within SM_b20008 at 12.505 kb on + strand, within SM_b20008 at 12.505 kb on + strand, within SM_b20008 at 12.931 kb on + strand, within SM_b20008 at 12.932 kb on - strand, within SM_b20008 at 12.933 kb on + strand, within SM_b20008 at 12.933 kb on + strand, within SM_b20008 at 12.934 kb on - strand, within SM_b20008 at 13.088 kb on + strand, within SM_b20008 at 13.268 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 9,500 - SM_b20006 0.43 +1.1 9,561 - SM_b20006 0.50 -1.5 9,695 + SM_b20006 0.64 +0.4 10,009 - +0.9 10,078 - +1.8 10,183 + +0.3 10,183 + -2.2 10,339 + -0.0 10,428 - SM_b20007 0.13 -0.1 10,686 + SM_b20007 0.25 +0.1 10,686 + SM_b20007 0.25 -4.2 10,686 + SM_b20007 0.25 +0.4 10,687 - SM_b20007 0.25 -0.5 10,687 - SM_b20007 0.25 -0.2 10,687 - SM_b20007 0.25 +1.6 10,695 + SM_b20007 0.26 +0.3 10,696 - SM_b20007 0.26 +3.2 11,277 - SM_b20007 0.53 +0.1 11,412 - SM_b20007 0.59 -1.8 11,531 + SM_b20007 0.65 -1.3 11,532 - SM_b20007 0.65 -0.1 11,995 - SM_b20007 0.87 +3.8 12,101 + +2.4 12,101 + -3.1 12,102 - +0.4 12,102 - -0.4 12,102 - -0.1 12,103 + +2.1 12,104 - -1.3 12,226 + +0.0 12,226 + +1.0 12,283 - +2.0 12,444 + SM_b20008 0.14 -0.6 12,445 - SM_b20008 0.14 -0.0 12,445 - SM_b20008 0.14 +0.8 12,503 + SM_b20008 0.19 +0.4 12,503 + SM_b20008 0.19 +1.0 12,505 + SM_b20008 0.19 -0.9 12,505 + SM_b20008 0.19 +0.6 12,931 + SM_b20008 0.59 +1.6 12,932 - SM_b20008 0.59 -2.5 12,933 + SM_b20008 0.60 -2.0 12,933 + SM_b20008 0.60 -3.9 12,934 - SM_b20008 0.60 +1.0 13,088 + SM_b20008 0.74 +2.0 13,268 + +1.0
Or see this region's nucleotide sequence