Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20002 and SM_b20003 are separated by 58 nucleotides SM_b20003 and SM_b20004 are separated by 6 nucleotides
SM_b20002: SM_b20002 - ABC transporter for Lactose, ATPase component <small>(from data)</small>, at 5,350 to 6,426
_b20002
SM_b20003: SM_b20003 - pyrroline-5-carboxylate reductase, at 6,485 to 7,261
_b20003
SM_b20004: SM_b20004 - gstR-like transcriptional regulator protein, at 7,268 to 8,173
_b20004
Position (kb) 6
7
8 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5.599 kb on + strand, within SM_b20002 at 5.599 kb on + strand, within SM_b20002 at 5.599 kb on + strand, within SM_b20002 at 5.608 kb on + strand, within SM_b20002 at 5.608 kb on + strand, within SM_b20002 at 5.616 kb on + strand, within SM_b20002 at 5.617 kb on - strand, within SM_b20002 at 5.617 kb on - strand, within SM_b20002 at 5.635 kb on - strand, within SM_b20002 at 5.635 kb on - strand, within SM_b20002 at 5.706 kb on + strand, within SM_b20002 at 5.863 kb on - strand, within SM_b20002 at 5.914 kb on + strand, within SM_b20002 at 5.915 kb on - strand, within SM_b20002 at 6.013 kb on + strand, within SM_b20002 at 6.014 kb on - strand, within SM_b20002 at 6.281 kb on - strand, within SM_b20002 at 6.448 kb on + strand at 6.448 kb on + strand at 6.449 kb on - strand at 6.449 kb on - strand at 6.449 kb on - strand at 6.449 kb on - strand at 6.490 kb on + strand at 6.947 kb on + strand, within SM_b20003 at 6.948 kb on - strand, within SM_b20003 at 6.986 kb on + strand, within SM_b20003 at 6.986 kb on + strand, within SM_b20003 at 6.987 kb on - strand, within SM_b20003 at 7.059 kb on - strand, within SM_b20003 at 7.059 kb on - strand, within SM_b20003 at 7.549 kb on + strand, within SM_b20004 at 7.806 kb on - strand, within SM_b20004 at 7.813 kb on + strand, within SM_b20004 at 7.980 kb on + strand, within SM_b20004 at 7.981 kb on - strand, within SM_b20004 at 7.981 kb on - strand, within SM_b20004 at 7.981 kb on - strand, within SM_b20004 at 7.981 kb on - strand, within SM_b20004 at 8.092 kb on + strand at 8.093 kb on - strand at 8.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 5,599 + SM_b20002 0.23 -0.7 5,599 + SM_b20002 0.23 -0.1 5,599 + SM_b20002 0.23 -0.1 5,608 + SM_b20002 0.24 -1.1 5,608 + SM_b20002 0.24 -0.5 5,616 + SM_b20002 0.25 +2.9 5,617 - SM_b20002 0.25 -2.0 5,617 - SM_b20002 0.25 +0.1 5,635 - SM_b20002 0.26 -2.8 5,635 - SM_b20002 0.26 +1.7 5,706 + SM_b20002 0.33 +1.6 5,863 - SM_b20002 0.48 -0.1 5,914 + SM_b20002 0.52 +0.8 5,915 - SM_b20002 0.52 -0.7 6,013 + SM_b20002 0.62 -0.6 6,014 - SM_b20002 0.62 +0.1 6,281 - SM_b20002 0.86 +1.7 6,448 + +1.0 6,448 + +2.5 6,449 - +0.1 6,449 - -1.3 6,449 - -0.3 6,449 - -0.4 6,490 + +1.7 6,947 + SM_b20003 0.59 -1.3 6,948 - SM_b20003 0.60 -1.0 6,986 + SM_b20003 0.64 -1.6 6,986 + SM_b20003 0.64 -0.3 6,987 - SM_b20003 0.65 +1.0 7,059 - SM_b20003 0.74 -0.2 7,059 - SM_b20003 0.74 -0.8 7,549 + SM_b20004 0.31 -2.4 7,806 - SM_b20004 0.59 +0.4 7,813 + SM_b20004 0.60 +1.2 7,980 + SM_b20004 0.79 +0.8 7,981 - SM_b20004 0.79 +0.7 7,981 - SM_b20004 0.79 -1.9 7,981 - SM_b20004 0.79 -0.3 7,981 - SM_b20004 0.79 -1.5 8,092 + +0.4 8,093 - +0.6 8,093 - -0.1
Or see this region's nucleotide sequence