Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_933 and Pf1N1B4_934 are separated by 380 nucleotides Pf1N1B4_934 and Pf1N1B4_935 overlap by 4 nucleotides
Pf1N1B4_933 - Mobile element protein, at 1,057,901 to 1,059,202
_933
Pf1N1B4_934 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 1,059,583 to 1,060,743
_934
Pf1N1B4_935 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 1,060,740 to 1,063,832
_935
Position (kb)
1059
1060
1061 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1059.200 kb on + strand at 1059.200 kb on + strand at 1059.210 kb on + strand at 1059.210 kb on + strand at 1059.210 kb on + strand at 1059.210 kb on + strand at 1059.210 kb on + strand at 1059.210 kb on + strand at 1059.210 kb on + strand at 1059.210 kb on + strand at 1059.210 kb on + strand at 1059.214 kb on + strand at 1059.214 kb on + strand at 1059.214 kb on + strand at 1059.218 kb on + strand at 1059.218 kb on + strand at 1059.218 kb on + strand at 1059.218 kb on + strand at 1059.218 kb on + strand at 1059.218 kb on + strand at 1059.264 kb on + strand at 1059.265 kb on - strand at 1059.265 kb on - strand at 1059.277 kb on + strand at 1059.277 kb on + strand at 1059.277 kb on + strand at 1059.277 kb on + strand at 1059.278 kb on - strand at 1059.278 kb on - strand at 1059.278 kb on - strand at 1059.416 kb on - strand at 1059.416 kb on - strand at 1059.416 kb on - strand at 1059.416 kb on - strand at 1059.416 kb on - strand at 1059.416 kb on - strand at 1059.488 kb on + strand at 1059.520 kb on + strand at 1059.520 kb on + strand at 1059.520 kb on + strand at 1059.520 kb on + strand at 1059.521 kb on - strand at 1059.523 kb on - strand at 1059.523 kb on - strand at 1059.523 kb on - strand at 1059.523 kb on - strand at 1059.523 kb on - strand at 1059.532 kb on + strand at 1059.532 kb on + strand at 1059.532 kb on + strand at 1059.533 kb on - strand at 1059.533 kb on - strand at 1059.533 kb on - strand at 1059.533 kb on - strand at 1059.533 kb on - strand at 1059.535 kb on - strand at 1059.535 kb on - strand at 1059.652 kb on + strand at 1059.653 kb on - strand at 1059.742 kb on + strand at 1059.743 kb on - strand, within Pf1N1B4_934 at 1059.743 kb on - strand, within Pf1N1B4_934 at 1059.743 kb on - strand, within Pf1N1B4_934 at 1060.012 kb on + strand, within Pf1N1B4_934 at 1060.012 kb on + strand, within Pf1N1B4_934 at 1060.012 kb on + strand, within Pf1N1B4_934 at 1060.012 kb on + strand at 1060.012 kb on + strand, within Pf1N1B4_934 at 1060.013 kb on - strand, within Pf1N1B4_934 at 1060.013 kb on - strand, within Pf1N1B4_934 at 1060.013 kb on - strand, within Pf1N1B4_934 at 1060.013 kb on - strand, within Pf1N1B4_934 at 1060.013 kb on - strand, within Pf1N1B4_934 at 1060.013 kb on - strand, within Pf1N1B4_934 at 1060.013 kb on - strand, within Pf1N1B4_934 at 1060.013 kb on - strand, within Pf1N1B4_934 at 1060.102 kb on + strand, within Pf1N1B4_934 at 1060.102 kb on + strand, within Pf1N1B4_934 at 1060.306 kb on + strand, within Pf1N1B4_934 at 1060.306 kb on + strand at 1060.306 kb on + strand, within Pf1N1B4_934 at 1060.306 kb on + strand, within Pf1N1B4_934 at 1060.307 kb on - strand, within Pf1N1B4_934 at 1060.307 kb on - strand, within Pf1N1B4_934 at 1060.307 kb on - strand, within Pf1N1B4_934 at 1060.521 kb on - strand, within Pf1N1B4_934 at 1060.697 kb on + strand at 1060.698 kb on - strand at 1061.274 kb on - strand, within Pf1N1B4_935 at 1061.274 kb on - strand, within Pf1N1B4_935 at 1061.274 kb on - strand, within Pf1N1B4_935 at 1061.412 kb on + strand, within Pf1N1B4_935 at 1061.412 kb on + strand, within Pf1N1B4_935 at 1061.412 kb on + strand, within Pf1N1B4_935 at 1061.413 kb on - strand, within Pf1N1B4_935 at 1061.413 kb on - strand, within Pf1N1B4_935 at 1061.413 kb on - strand, within Pf1N1B4_935 at 1061.493 kb on + strand, within Pf1N1B4_935 at 1061.493 kb on + strand, within Pf1N1B4_935 at 1061.494 kb on - strand, within Pf1N1B4_935 at 1061.494 kb on - strand, within Pf1N1B4_935 at 1061.527 kb on + strand, within Pf1N1B4_935 at 1061.527 kb on + strand, within Pf1N1B4_935 at 1061.528 kb on - strand, within Pf1N1B4_935 at 1061.528 kb on - strand, within Pf1N1B4_935 at 1061.559 kb on + strand, within Pf1N1B4_935 at 1061.559 kb on + strand, within Pf1N1B4_935 at 1061.559 kb on + strand at 1061.560 kb on - strand, within Pf1N1B4_935 at 1061.560 kb on - strand, within Pf1N1B4_935 at 1061.560 kb on - strand, within Pf1N1B4_935 at 1061.560 kb on - strand, within Pf1N1B4_935 at 1061.560 kb on - strand, within Pf1N1B4_935 at 1061.649 kb on - strand, within Pf1N1B4_935
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml remove 1,059,200 + -0.8 1,059,200 + +0.2 1,059,210 + +1.2 1,059,210 + +0.2 1,059,210 + +3.0 1,059,210 + +0.8 1,059,210 + +0.4 1,059,210 + +1.2 1,059,210 + -0.1 1,059,210 + -0.1 1,059,210 + -0.2 1,059,214 + -0.4 1,059,214 + +0.2 1,059,214 + -2.1 1,059,218 + -1.4 1,059,218 + -2.8 1,059,218 + +1.5 1,059,218 + -0.8 1,059,218 + +2.2 1,059,218 + -1.4 1,059,264 + -0.5 1,059,265 - +0.2 1,059,265 - -0.1 1,059,277 + +0.8 1,059,277 + +0.0 1,059,277 + +1.2 1,059,277 + +2.2 1,059,278 - -1.4 1,059,278 - -0.8 1,059,278 - -0.8 1,059,416 - +0.2 1,059,416 - -1.2 1,059,416 - -0.1 1,059,416 - +0.4 1,059,416 - +0.7 1,059,416 - -0.8 1,059,488 + -0.7 1,059,520 + +2.8 1,059,520 + +0.9 1,059,520 + -1.6 1,059,520 + -0.8 1,059,521 - +0.5 1,059,523 - +2.8 1,059,523 - +0.9 1,059,523 - -2.1 1,059,523 - +0.6 1,059,523 - -0.3 1,059,532 + -1.8 1,059,532 + +0.2 1,059,532 + -0.4 1,059,533 - -1.8 1,059,533 - +0.5 1,059,533 - -0.8 1,059,533 - +1.2 1,059,533 - -1.4 1,059,535 - -0.8 1,059,535 - +0.8 1,059,652 + -1.8 1,059,653 - +0.9 1,059,742 + -1.4 1,059,743 - Pf1N1B4_934 0.14 +0.2 1,059,743 - Pf1N1B4_934 0.14 +0.5 1,059,743 - Pf1N1B4_934 0.14 -1.8 1,060,012 + Pf1N1B4_934 0.37 +0.2 1,060,012 + Pf1N1B4_934 0.37 -1.2 1,060,012 + Pf1N1B4_934 0.37 -0.4 1,060,012 + -0.2 1,060,012 + Pf1N1B4_934 0.37 +1.2 1,060,013 - Pf1N1B4_934 0.37 -0.8 1,060,013 - Pf1N1B4_934 0.37 -0.8 1,060,013 - Pf1N1B4_934 0.37 -2.8 1,060,013 - Pf1N1B4_934 0.37 +1.8 1,060,013 - Pf1N1B4_934 0.37 -2.1 1,060,013 - Pf1N1B4_934 0.37 -2.4 1,060,013 - Pf1N1B4_934 0.37 -2.1 1,060,013 - Pf1N1B4_934 0.37 -0.7 1,060,102 + Pf1N1B4_934 0.45 -2.4 1,060,102 + Pf1N1B4_934 0.45 -0.3 1,060,306 + Pf1N1B4_934 0.62 -2.4 1,060,306 + +3.0 1,060,306 + Pf1N1B4_934 0.62 -2.6 1,060,306 + Pf1N1B4_934 0.62 -0.4 1,060,307 - Pf1N1B4_934 0.62 -1.4 1,060,307 - Pf1N1B4_934 0.62 -0.6 1,060,307 - Pf1N1B4_934 0.62 -0.5 1,060,521 - Pf1N1B4_934 0.81 +0.5 1,060,697 + -1.2 1,060,698 - +1.4 1,061,274 - Pf1N1B4_935 0.17 +0.8 1,061,274 - Pf1N1B4_935 0.17 -0.8 1,061,274 - Pf1N1B4_935 0.17 -1.1 1,061,412 + Pf1N1B4_935 0.22 +0.7 1,061,412 + Pf1N1B4_935 0.22 -1.0 1,061,412 + Pf1N1B4_935 0.22 +0.6 1,061,413 - Pf1N1B4_935 0.22 +0.9 1,061,413 - Pf1N1B4_935 0.22 +1.3 1,061,413 - Pf1N1B4_935 0.22 -1.3 1,061,493 + Pf1N1B4_935 0.24 -1.0 1,061,493 + Pf1N1B4_935 0.24 +0.2 1,061,494 - Pf1N1B4_935 0.24 -1.6 1,061,494 - Pf1N1B4_935 0.24 -1.8 1,061,527 + Pf1N1B4_935 0.25 -0.4 1,061,527 + Pf1N1B4_935 0.25 +0.2 1,061,528 - Pf1N1B4_935 0.25 +0.2 1,061,528 - Pf1N1B4_935 0.25 -0.7 1,061,559 + Pf1N1B4_935 0.26 +0.2 1,061,559 + Pf1N1B4_935 0.26 +0.2 1,061,559 + +0.2 1,061,560 - Pf1N1B4_935 0.27 -2.1 1,061,560 - Pf1N1B4_935 0.27 -1.8 1,061,560 - Pf1N1B4_935 0.27 +0.8 1,061,560 - Pf1N1B4_935 0.27 +0.5 1,061,560 - Pf1N1B4_935 0.27 -0.5 1,061,649 - Pf1N1B4_935 0.29 -1.4
Or see this region's nucleotide sequence