Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_934

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_933 and Pf1N1B4_934 are separated by 380 nucleotidesPf1N1B4_934 and Pf1N1B4_935 overlap by 4 nucleotides Pf1N1B4_933 - Mobile element protein, at 1,057,901 to 1,059,202 _933 Pf1N1B4_934 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 1,059,583 to 1,060,743 _934 Pf1N1B4_935 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 1,060,740 to 1,063,832 _935 Position (kb) 1059 1060 1061Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1059.200 kb on + strandat 1059.200 kb on + strandat 1059.210 kb on + strandat 1059.210 kb on + strandat 1059.210 kb on + strandat 1059.210 kb on + strandat 1059.210 kb on + strandat 1059.210 kb on + strandat 1059.210 kb on + strandat 1059.210 kb on + strandat 1059.210 kb on + strandat 1059.214 kb on + strandat 1059.214 kb on + strandat 1059.214 kb on + strandat 1059.218 kb on + strandat 1059.218 kb on + strandat 1059.218 kb on + strandat 1059.218 kb on + strandat 1059.218 kb on + strandat 1059.218 kb on + strandat 1059.264 kb on + strandat 1059.265 kb on - strandat 1059.265 kb on - strandat 1059.277 kb on + strandat 1059.277 kb on + strandat 1059.277 kb on + strandat 1059.277 kb on + strandat 1059.278 kb on - strandat 1059.278 kb on - strandat 1059.278 kb on - strandat 1059.416 kb on - strandat 1059.416 kb on - strandat 1059.416 kb on - strandat 1059.416 kb on - strandat 1059.416 kb on - strandat 1059.416 kb on - strandat 1059.488 kb on + strandat 1059.520 kb on + strandat 1059.520 kb on + strandat 1059.520 kb on + strandat 1059.520 kb on + strandat 1059.521 kb on - strandat 1059.523 kb on - strandat 1059.523 kb on - strandat 1059.523 kb on - strandat 1059.523 kb on - strandat 1059.523 kb on - strandat 1059.532 kb on + strandat 1059.532 kb on + strandat 1059.532 kb on + strandat 1059.533 kb on - strandat 1059.533 kb on - strandat 1059.533 kb on - strandat 1059.533 kb on - strandat 1059.533 kb on - strandat 1059.535 kb on - strandat 1059.535 kb on - strandat 1059.652 kb on + strandat 1059.653 kb on - strandat 1059.742 kb on + strandat 1059.743 kb on - strand, within Pf1N1B4_934at 1059.743 kb on - strand, within Pf1N1B4_934at 1059.743 kb on - strand, within Pf1N1B4_934at 1060.012 kb on + strand, within Pf1N1B4_934at 1060.012 kb on + strand, within Pf1N1B4_934at 1060.012 kb on + strand, within Pf1N1B4_934at 1060.012 kb on + strandat 1060.012 kb on + strand, within Pf1N1B4_934at 1060.013 kb on - strand, within Pf1N1B4_934at 1060.013 kb on - strand, within Pf1N1B4_934at 1060.013 kb on - strand, within Pf1N1B4_934at 1060.013 kb on - strand, within Pf1N1B4_934at 1060.013 kb on - strand, within Pf1N1B4_934at 1060.013 kb on - strand, within Pf1N1B4_934at 1060.013 kb on - strand, within Pf1N1B4_934at 1060.013 kb on - strand, within Pf1N1B4_934at 1060.102 kb on + strand, within Pf1N1B4_934at 1060.102 kb on + strand, within Pf1N1B4_934at 1060.306 kb on + strand, within Pf1N1B4_934at 1060.306 kb on + strandat 1060.306 kb on + strand, within Pf1N1B4_934at 1060.306 kb on + strand, within Pf1N1B4_934at 1060.307 kb on - strand, within Pf1N1B4_934at 1060.307 kb on - strand, within Pf1N1B4_934at 1060.307 kb on - strand, within Pf1N1B4_934at 1060.521 kb on - strand, within Pf1N1B4_934at 1060.697 kb on + strandat 1060.698 kb on - strandat 1061.274 kb on - strand, within Pf1N1B4_935at 1061.274 kb on - strand, within Pf1N1B4_935at 1061.274 kb on - strand, within Pf1N1B4_935at 1061.412 kb on + strand, within Pf1N1B4_935at 1061.412 kb on + strand, within Pf1N1B4_935at 1061.412 kb on + strand, within Pf1N1B4_935at 1061.413 kb on - strand, within Pf1N1B4_935at 1061.413 kb on - strand, within Pf1N1B4_935at 1061.413 kb on - strand, within Pf1N1B4_935at 1061.493 kb on + strand, within Pf1N1B4_935at 1061.493 kb on + strand, within Pf1N1B4_935at 1061.494 kb on - strand, within Pf1N1B4_935at 1061.494 kb on - strand, within Pf1N1B4_935at 1061.527 kb on + strand, within Pf1N1B4_935at 1061.527 kb on + strand, within Pf1N1B4_935at 1061.528 kb on - strand, within Pf1N1B4_935at 1061.528 kb on - strand, within Pf1N1B4_935at 1061.559 kb on + strand, within Pf1N1B4_935at 1061.559 kb on + strand, within Pf1N1B4_935at 1061.559 kb on + strandat 1061.560 kb on - strand, within Pf1N1B4_935at 1061.560 kb on - strand, within Pf1N1B4_935at 1061.560 kb on - strand, within Pf1N1B4_935at 1061.560 kb on - strand, within Pf1N1B4_935at 1061.560 kb on - strand, within Pf1N1B4_935at 1061.649 kb on - strand, within Pf1N1B4_935

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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1,059,200 + -0.8
1,059,200 + +0.2
1,059,210 + +1.2
1,059,210 + +0.2
1,059,210 + +3.0
1,059,210 + +0.8
1,059,210 + +0.4
1,059,210 + +1.2
1,059,210 + -0.1
1,059,210 + -0.1
1,059,210 + -0.2
1,059,214 + -0.4
1,059,214 + +0.2
1,059,214 + -2.1
1,059,218 + -1.4
1,059,218 + -2.8
1,059,218 + +1.5
1,059,218 + -0.8
1,059,218 + +2.2
1,059,218 + -1.4
1,059,264 + -0.5
1,059,265 - +0.2
1,059,265 - -0.1
1,059,277 + +0.8
1,059,277 + +0.0
1,059,277 + +1.2
1,059,277 + +2.2
1,059,278 - -1.4
1,059,278 - -0.8
1,059,278 - -0.8
1,059,416 - +0.2
1,059,416 - -1.2
1,059,416 - -0.1
1,059,416 - +0.4
1,059,416 - +0.7
1,059,416 - -0.8
1,059,488 + -0.7
1,059,520 + +2.8
1,059,520 + +0.9
1,059,520 + -1.6
1,059,520 + -0.8
1,059,521 - +0.5
1,059,523 - +2.8
1,059,523 - +0.9
1,059,523 - -2.1
1,059,523 - +0.6
1,059,523 - -0.3
1,059,532 + -1.8
1,059,532 + +0.2
1,059,532 + -0.4
1,059,533 - -1.8
1,059,533 - +0.5
1,059,533 - -0.8
1,059,533 - +1.2
1,059,533 - -1.4
1,059,535 - -0.8
1,059,535 - +0.8
1,059,652 + -1.8
1,059,653 - +0.9
1,059,742 + -1.4
1,059,743 - Pf1N1B4_934 0.14 +0.2
1,059,743 - Pf1N1B4_934 0.14 +0.5
1,059,743 - Pf1N1B4_934 0.14 -1.8
1,060,012 + Pf1N1B4_934 0.37 +0.2
1,060,012 + Pf1N1B4_934 0.37 -1.2
1,060,012 + Pf1N1B4_934 0.37 -0.4
1,060,012 + -0.2
1,060,012 + Pf1N1B4_934 0.37 +1.2
1,060,013 - Pf1N1B4_934 0.37 -0.8
1,060,013 - Pf1N1B4_934 0.37 -0.8
1,060,013 - Pf1N1B4_934 0.37 -2.8
1,060,013 - Pf1N1B4_934 0.37 +1.8
1,060,013 - Pf1N1B4_934 0.37 -2.1
1,060,013 - Pf1N1B4_934 0.37 -2.4
1,060,013 - Pf1N1B4_934 0.37 -2.1
1,060,013 - Pf1N1B4_934 0.37 -0.7
1,060,102 + Pf1N1B4_934 0.45 -2.4
1,060,102 + Pf1N1B4_934 0.45 -0.3
1,060,306 + Pf1N1B4_934 0.62 -2.4
1,060,306 + +3.0
1,060,306 + Pf1N1B4_934 0.62 -2.6
1,060,306 + Pf1N1B4_934 0.62 -0.4
1,060,307 - Pf1N1B4_934 0.62 -1.4
1,060,307 - Pf1N1B4_934 0.62 -0.6
1,060,307 - Pf1N1B4_934 0.62 -0.5
1,060,521 - Pf1N1B4_934 0.81 +0.5
1,060,697 + -1.2
1,060,698 - +1.4
1,061,274 - Pf1N1B4_935 0.17 +0.8
1,061,274 - Pf1N1B4_935 0.17 -0.8
1,061,274 - Pf1N1B4_935 0.17 -1.1
1,061,412 + Pf1N1B4_935 0.22 +0.7
1,061,412 + Pf1N1B4_935 0.22 -1.0
1,061,412 + Pf1N1B4_935 0.22 +0.6
1,061,413 - Pf1N1B4_935 0.22 +0.9
1,061,413 - Pf1N1B4_935 0.22 +1.3
1,061,413 - Pf1N1B4_935 0.22 -1.3
1,061,493 + Pf1N1B4_935 0.24 -1.0
1,061,493 + Pf1N1B4_935 0.24 +0.2
1,061,494 - Pf1N1B4_935 0.24 -1.6
1,061,494 - Pf1N1B4_935 0.24 -1.8
1,061,527 + Pf1N1B4_935 0.25 -0.4
1,061,527 + Pf1N1B4_935 0.25 +0.2
1,061,528 - Pf1N1B4_935 0.25 +0.2
1,061,528 - Pf1N1B4_935 0.25 -0.7
1,061,559 + Pf1N1B4_935 0.26 +0.2
1,061,559 + Pf1N1B4_935 0.26 +0.2
1,061,559 + +0.2
1,061,560 - Pf1N1B4_935 0.27 -2.1
1,061,560 - Pf1N1B4_935 0.27 -1.8
1,061,560 - Pf1N1B4_935 0.27 +0.8
1,061,560 - Pf1N1B4_935 0.27 +0.5
1,061,560 - Pf1N1B4_935 0.27 -0.5
1,061,649 - Pf1N1B4_935 0.29 -1.4

Or see this region's nucleotide sequence