Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_818

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_816 and Pf1N1B4_817 are separated by 41 nucleotidesPf1N1B4_817 and Pf1N1B4_818 are separated by 161 nucleotidesPf1N1B4_818 and Pf1N1B4_819 are separated by 349 nucleotides Pf1N1B4_816 - Integral membrane protein, at 933,828 to 934,433 _816 Pf1N1B4_817 - FIG00955104: hypothetical protein, at 934,475 to 934,705 _817 Pf1N1B4_818 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 934,867 to 936,255 _818 Pf1N1B4_819 - Benzoate transport protein, at 936,605 to 937,810 _819 Position (kb) 934 935 936 937Strain fitness (log2 ratio) -2 -1 0 1 2 3at 933.958 kb on + strand, within Pf1N1B4_816at 934.006 kb on + strand, within Pf1N1B4_816at 934.007 kb on - strand, within Pf1N1B4_816at 934.007 kb on - strand, within Pf1N1B4_816at 934.007 kb on - strandat 934.007 kb on - strand, within Pf1N1B4_816at 934.018 kb on + strand, within Pf1N1B4_816at 934.019 kb on - strand, within Pf1N1B4_816at 934.019 kb on - strand, within Pf1N1B4_816at 934.019 kb on - strand, within Pf1N1B4_816at 934.055 kb on + strand, within Pf1N1B4_816at 934.056 kb on - strand, within Pf1N1B4_816at 934.082 kb on - strand, within Pf1N1B4_816at 934.177 kb on + strand, within Pf1N1B4_816at 934.178 kb on - strand, within Pf1N1B4_816at 934.375 kb on - strandat 934.375 kb on - strandat 934.375 kb on - strandat 934.375 kb on - strandat 934.379 kb on - strandat 934.379 kb on - strandat 934.379 kb on - strandat 934.390 kb on + strandat 934.390 kb on + strandat 934.391 kb on - strandat 934.391 kb on - strandat 934.509 kb on + strand, within Pf1N1B4_817at 934.510 kb on - strand, within Pf1N1B4_817at 934.573 kb on + strand, within Pf1N1B4_817at 934.574 kb on - strandat 934.632 kb on + strand, within Pf1N1B4_817at 934.632 kb on + strand, within Pf1N1B4_817at 934.632 kb on + strand, within Pf1N1B4_817at 934.633 kb on - strand, within Pf1N1B4_817at 934.808 kb on + strandat 934.808 kb on + strandat 934.808 kb on + strandat 934.809 kb on - strandat 934.814 kb on + strandat 934.855 kb on + strandat 934.855 kb on + strandat 934.855 kb on + strandat 934.871 kb on + strandat 934.986 kb on + strandat 934.987 kb on - strandat 935.097 kb on - strand, within Pf1N1B4_818at 935.097 kb on - strand, within Pf1N1B4_818at 935.097 kb on - strand, within Pf1N1B4_818at 935.103 kb on - strandat 935.103 kb on - strand, within Pf1N1B4_818at 935.182 kb on - strand, within Pf1N1B4_818at 935.220 kb on + strand, within Pf1N1B4_818at 935.220 kb on + strand, within Pf1N1B4_818at 935.309 kb on + strand, within Pf1N1B4_818at 935.309 kb on + strand, within Pf1N1B4_818at 935.310 kb on - strand, within Pf1N1B4_818at 935.310 kb on - strand, within Pf1N1B4_818at 935.364 kb on - strand, within Pf1N1B4_818at 935.429 kb on + strand, within Pf1N1B4_818at 935.429 kb on + strandat 935.430 kb on - strand, within Pf1N1B4_818at 935.430 kb on - strand, within Pf1N1B4_818at 935.430 kb on - strand, within Pf1N1B4_818at 935.850 kb on - strand, within Pf1N1B4_818at 935.913 kb on - strand, within Pf1N1B4_818at 935.931 kb on - strand, within Pf1N1B4_818at 935.931 kb on - strand, within Pf1N1B4_818at 935.931 kb on - strand, within Pf1N1B4_818at 935.931 kb on - strand, within Pf1N1B4_818at 935.931 kb on - strand, within Pf1N1B4_818at 935.957 kb on - strand, within Pf1N1B4_818at 935.992 kb on - strand, within Pf1N1B4_818at 935.992 kb on - strand, within Pf1N1B4_818at 936.028 kb on + strand, within Pf1N1B4_818at 936.028 kb on + strand, within Pf1N1B4_818at 936.028 kb on + strand, within Pf1N1B4_818at 936.029 kb on - strand, within Pf1N1B4_818at 936.029 kb on - strand, within Pf1N1B4_818at 936.029 kb on - strand, within Pf1N1B4_818at 936.029 kb on - strand, within Pf1N1B4_818at 936.029 kb on - strand, within Pf1N1B4_818at 936.032 kb on + strand, within Pf1N1B4_818at 936.032 kb on + strand, within Pf1N1B4_818at 936.032 kb on + strand, within Pf1N1B4_818at 936.032 kb on + strand, within Pf1N1B4_818at 936.032 kb on + strand, within Pf1N1B4_818at 936.032 kb on + strand, within Pf1N1B4_818at 936.032 kb on + strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.085 kb on - strand, within Pf1N1B4_818at 936.087 kb on - strandat 936.087 kb on - strand, within Pf1N1B4_818at 936.215 kb on + strandat 936.215 kb on + strandat 936.215 kb on + strandat 936.215 kb on + strandat 936.215 kb on + strandat 936.215 kb on + strandat 936.215 kb on + strandat 936.216 kb on - strandat 936.216 kb on - strandat 936.216 kb on - strandat 936.216 kb on - strandat 936.216 kb on - strandat 936.216 kb on - strandat 936.216 kb on - strandat 936.239 kb on - strandat 936.298 kb on + strandat 936.320 kb on + strandat 936.324 kb on - strandat 936.484 kb on - strandat 936.627 kb on + strandat 936.627 kb on + strandat 936.627 kb on + strandat 936.627 kb on + strandat 936.628 kb on - strandat 936.674 kb on + strandat 936.674 kb on + strandat 936.821 kb on - strand, within Pf1N1B4_819at 936.899 kb on + strand, within Pf1N1B4_819at 936.899 kb on + strand, within Pf1N1B4_819at 936.899 kb on + strand, within Pf1N1B4_819at 936.899 kb on + strand, within Pf1N1B4_819at 936.900 kb on - strand, within Pf1N1B4_819at 936.900 kb on - strandat 936.900 kb on - strand, within Pf1N1B4_819at 936.915 kb on + strand, within Pf1N1B4_819at 936.920 kb on - strand, within Pf1N1B4_819at 937.245 kb on + strand, within Pf1N1B4_819at 937.249 kb on + strand, within Pf1N1B4_819

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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933,958 + Pf1N1B4_816 0.21 +0.1
934,006 + Pf1N1B4_816 0.29 +2.1
934,007 - Pf1N1B4_816 0.30 +1.7
934,007 - Pf1N1B4_816 0.30 +0.1
934,007 - +1.7
934,007 - Pf1N1B4_816 0.30 -0.6
934,018 + Pf1N1B4_816 0.31 -1.2
934,019 - Pf1N1B4_816 0.32 +2.5
934,019 - Pf1N1B4_816 0.32 +0.9
934,019 - Pf1N1B4_816 0.32 +0.9
934,055 + Pf1N1B4_816 0.37 +0.1
934,056 - Pf1N1B4_816 0.38 +0.1
934,082 - Pf1N1B4_816 0.42 -1.4
934,177 + Pf1N1B4_816 0.58 +1.4
934,178 - Pf1N1B4_816 0.58 +0.1
934,375 - +0.7
934,375 - +2.8
934,375 - +1.4
934,375 - -1.1
934,379 - +2.9
934,379 - +0.1
934,379 - +0.1
934,390 + +1.7
934,390 + +1.6
934,391 - -0.5
934,391 - -0.9
934,509 + Pf1N1B4_817 0.15 +0.1
934,510 - Pf1N1B4_817 0.15 -1.0
934,573 + Pf1N1B4_817 0.42 -0.4
934,574 - -0.9
934,632 + Pf1N1B4_817 0.68 +0.7
934,632 + Pf1N1B4_817 0.68 -0.9
934,632 + Pf1N1B4_817 0.68 -2.4
934,633 - Pf1N1B4_817 0.68 -0.3
934,808 + -0.9
934,808 + -0.4
934,808 + +1.1
934,809 - +0.1
934,814 + +1.9
934,855 + -0.6
934,855 + +0.1
934,855 + -1.4
934,871 + -2.0
934,986 + +1.5
934,987 - +1.9
935,097 - Pf1N1B4_818 0.17 +0.6
935,097 - Pf1N1B4_818 0.17 +0.1
935,097 - Pf1N1B4_818 0.17 -0.2
935,103 - +0.7
935,103 - Pf1N1B4_818 0.17 -1.9
935,182 - Pf1N1B4_818 0.23 -0.9
935,220 + Pf1N1B4_818 0.25 -0.9
935,220 + Pf1N1B4_818 0.25 -0.9
935,309 + Pf1N1B4_818 0.32 -1.2
935,309 + Pf1N1B4_818 0.32 +0.9
935,310 - Pf1N1B4_818 0.32 +1.9
935,310 - Pf1N1B4_818 0.32 -2.0
935,364 - Pf1N1B4_818 0.36 -0.9
935,429 + Pf1N1B4_818 0.40 -0.9
935,429 + +2.5
935,430 - Pf1N1B4_818 0.41 +1.6
935,430 - Pf1N1B4_818 0.41 -0.4
935,430 - Pf1N1B4_818 0.41 -2.3
935,850 - Pf1N1B4_818 0.71 -1.3
935,913 - Pf1N1B4_818 0.75 -0.3
935,931 - Pf1N1B4_818 0.77 -0.3
935,931 - Pf1N1B4_818 0.77 +0.5
935,931 - Pf1N1B4_818 0.77 -1.1
935,931 - Pf1N1B4_818 0.77 -1.4
935,931 - Pf1N1B4_818 0.77 -1.9
935,957 - Pf1N1B4_818 0.78 +1.1
935,992 - Pf1N1B4_818 0.81 -0.5
935,992 - Pf1N1B4_818 0.81 +0.4
936,028 + Pf1N1B4_818 0.84 +0.8
936,028 + Pf1N1B4_818 0.84 -0.0
936,028 + Pf1N1B4_818 0.84 -0.9
936,029 - Pf1N1B4_818 0.84 -0.9
936,029 - Pf1N1B4_818 0.84 -0.7
936,029 - Pf1N1B4_818 0.84 +2.2
936,029 - Pf1N1B4_818 0.84 +0.6
936,029 - Pf1N1B4_818 0.84 -0.9
936,032 + Pf1N1B4_818 0.84 -1.4
936,032 + Pf1N1B4_818 0.84 +0.9
936,032 + Pf1N1B4_818 0.84 -1.9
936,032 + Pf1N1B4_818 0.84 +1.7
936,032 + Pf1N1B4_818 0.84 -0.4
936,032 + Pf1N1B4_818 0.84 +1.7
936,032 + Pf1N1B4_818 0.84 -1.4
936,033 - Pf1N1B4_818 0.84 +0.9
936,033 - Pf1N1B4_818 0.84 -2.2
936,033 - Pf1N1B4_818 0.84 +0.6
936,033 - Pf1N1B4_818 0.84 +0.1
936,033 - Pf1N1B4_818 0.84 +0.7
936,033 - Pf1N1B4_818 0.84 +0.1
936,033 - Pf1N1B4_818 0.84 -0.9
936,033 - Pf1N1B4_818 0.84 -0.0
936,033 - Pf1N1B4_818 0.84 +2.1
936,033 - Pf1N1B4_818 0.84 +0.3
936,033 - Pf1N1B4_818 0.84 +0.6
936,033 - Pf1N1B4_818 0.84 -0.0
936,033 - Pf1N1B4_818 0.84 -2.2
936,085 - Pf1N1B4_818 0.88 -0.6
936,087 - +0.1
936,087 - Pf1N1B4_818 0.88 +2.6
936,215 + -0.9
936,215 + -0.2
936,215 + +0.7
936,215 + +0.0
936,215 + -0.1
936,215 + -2.4
936,215 + -1.4
936,216 - -1.9
936,216 - +1.0
936,216 - +1.3
936,216 - -0.4
936,216 - +0.1
936,216 - -0.4
936,216 - +0.9
936,239 - -0.4
936,298 + -2.2
936,320 + +1.1
936,324 - -0.9
936,484 - +2.1
936,627 + +1.7
936,627 + -0.4
936,627 + +2.1
936,627 + -1.4
936,628 - +1.0
936,674 + +0.1
936,674 + +0.1
936,821 - Pf1N1B4_819 0.18 +2.3
936,899 + Pf1N1B4_819 0.24 +0.1
936,899 + Pf1N1B4_819 0.24 +0.1
936,899 + Pf1N1B4_819 0.24 -0.3
936,899 + Pf1N1B4_819 0.24 -2.3
936,900 - Pf1N1B4_819 0.24 -1.9
936,900 - +0.1
936,900 - Pf1N1B4_819 0.24 +0.5
936,915 + Pf1N1B4_819 0.26 -0.9
936,920 - Pf1N1B4_819 0.26 -2.0
937,245 + Pf1N1B4_819 0.53 +1.5
937,249 + Pf1N1B4_819 0.53 -0.2

Or see this region's nucleotide sequence