Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5531 and Pf1N1B4_5532 are separated by 836 nucleotides
Pf1N1B4_5531 - hypothetical protein, at 290,418 to 290,804
_5531
Pf1N1B4_5532 - hypothetical protein, at 291,641 to 293,752
_5532
Position (kb)
291
292
293
294 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 290.772 kb on + strand at 290.878 kb on + strand at 290.878 kb on + strand at 290.878 kb on + strand at 290.879 kb on - strand at 290.879 kb on - strand at 290.925 kb on + strand at 291.031 kb on - strand at 291.031 kb on - strand at 291.031 kb on - strand at 291.031 kb on - strand at 291.031 kb on - strand at 291.037 kb on + strand at 291.037 kb on + strand at 291.037 kb on + strand at 291.055 kb on + strand at 291.056 kb on - strand at 291.092 kb on + strand at 291.092 kb on + strand at 291.092 kb on + strand at 291.093 kb on - strand at 291.093 kb on - strand at 291.093 kb on - strand at 291.093 kb on - strand at 291.093 kb on - strand at 291.093 kb on - strand at 291.093 kb on - strand at 291.097 kb on - strand at 291.097 kb on - strand at 291.181 kb on + strand at 291.182 kb on - strand at 291.182 kb on - strand at 291.342 kb on + strand at 291.343 kb on - strand at 291.348 kb on + strand at 291.348 kb on + strand at 291.370 kb on - strand at 291.391 kb on + strand at 291.392 kb on - strand at 291.392 kb on - strand at 291.396 kb on - strand at 291.424 kb on + strand at 291.424 kb on + strand at 291.425 kb on - strand at 291.425 kb on - strand at 291.439 kb on + strand at 291.439 kb on + strand at 291.631 kb on + strand at 291.631 kb on + strand at 291.632 kb on - strand at 291.632 kb on - strand at 291.642 kb on + strand at 291.643 kb on - strand at 291.643 kb on - strand at 291.643 kb on - strand at 291.643 kb on - strand at 291.643 kb on - strand at 291.643 kb on - strand at 291.643 kb on - strand at 291.643 kb on - strand at 291.643 kb on - strand at 291.726 kb on - strand at 291.732 kb on - strand at 291.732 kb on - strand at 291.768 kb on + strand at 291.768 kb on + strand at 291.821 kb on - strand at 291.852 kb on - strand at 291.982 kb on + strand, within Pf1N1B4_5532 at 291.983 kb on - strand, within Pf1N1B4_5532 at 291.983 kb on - strand, within Pf1N1B4_5532 at 292.001 kb on - strand, within Pf1N1B4_5532 at 292.080 kb on - strand, within Pf1N1B4_5532 at 292.241 kb on + strand, within Pf1N1B4_5532 at 292.242 kb on - strand, within Pf1N1B4_5532 at 292.242 kb on - strand, within Pf1N1B4_5532 at 292.511 kb on - strand at 292.685 kb on - strand, within Pf1N1B4_5532 at 292.939 kb on + strand, within Pf1N1B4_5532 at 292.940 kb on - strand, within Pf1N1B4_5532 at 292.940 kb on - strand, within Pf1N1B4_5532 at 292.940 kb on - strand, within Pf1N1B4_5532 at 293.219 kb on - strand, within Pf1N1B4_5532 at 293.219 kb on - strand, within Pf1N1B4_5532 at 293.249 kb on - strand, within Pf1N1B4_5532 at 293.249 kb on - strand, within Pf1N1B4_5532 at 293.299 kb on + strand, within Pf1N1B4_5532 at 293.300 kb on - strand, within Pf1N1B4_5532 at 293.314 kb on - strand, within Pf1N1B4_5532 at 293.314 kb on - strand, within Pf1N1B4_5532 at 293.314 kb on - strand, within Pf1N1B4_5532 at 293.325 kb on + strand, within Pf1N1B4_5532 at 293.326 kb on - strand, within Pf1N1B4_5532 at 293.333 kb on - strand, within Pf1N1B4_5532 at 293.520 kb on + strand, within Pf1N1B4_5532 at 293.630 kb on + strand at 293.630 kb on + strand at 293.706 kb on + strand at 293.752 kb on + strand at 293.753 kb on - strand at 293.756 kb on + strand at 293.756 kb on + strand at 293.756 kb on + strand at 293.757 kb on - strand at 293.787 kb on + strand at 293.788 kb on - strand at 293.788 kb on - strand at 293.788 kb on - strand at 293.823 kb on + strand at 293.851 kb on - strand at 293.887 kb on + strand at 293.888 kb on - strand at 293.888 kb on - strand at 293.898 kb on - strand at 293.898 kb on - strand at 293.901 kb on + strand at 293.901 kb on + strand at 293.901 kb on + strand at 293.907 kb on + strand at 293.907 kb on + strand at 293.986 kb on - strand at 293.998 kb on + strand at 293.998 kb on + strand at 293.998 kb on + strand at 293.999 kb on - strand at 293.999 kb on - strand at 294.001 kb on + strand at 294.002 kb on - strand at 294.002 kb on - strand at 294.002 kb on - strand at 294.095 kb on + strand at 294.122 kb on + strand at 294.122 kb on + strand at 294.122 kb on + strand at 294.122 kb on + strand at 294.122 kb on + strand at 294.122 kb on + strand at 294.445 kb on + strand at 294.448 kb on + strand at 294.448 kb on + strand at 294.448 kb on + strand at 294.448 kb on + strand at 294.476 kb on + strand at 294.479 kb on + strand at 294.479 kb on + strand at 294.479 kb on + strand at 294.479 kb on + strand at 294.479 kb on + strand at 294.479 kb on + strand at 294.514 kb on + strand at 294.575 kb on + strand at 294.609 kb on + strand at 294.609 kb on + strand at 294.610 kb on - strand at 294.736 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml remove 290,772 + +0.4 290,878 + -0.0 290,878 + -0.0 290,878 + -0.0 290,879 - +2.0 290,879 - +1.0 290,925 + +0.1 291,031 - -0.6 291,031 - +1.0 291,031 - -1.6 291,031 - -0.0 291,031 - +0.6 291,037 + -0.0 291,037 + -1.6 291,037 + -1.0 291,055 + -2.0 291,056 - -2.0 291,092 + -0.0 291,092 + +2.0 291,092 + -2.8 291,093 - -1.6 291,093 - -1.6 291,093 - -0.0 291,093 - +1.9 291,093 - -2.0 291,093 - -1.0 291,093 - +1.0 291,097 - -1.6 291,097 - +1.0 291,181 + -1.6 291,182 - -1.3 291,182 - -2.8 291,342 + +1.2 291,343 - +1.0 291,348 + +1.0 291,348 + -0.0 291,370 - +0.5 291,391 + +1.0 291,392 - +2.0 291,392 - +0.6 291,396 - -2.6 291,424 + -1.6 291,424 + +0.4 291,425 - -1.6 291,425 - -0.4 291,439 + -1.0 291,439 + +1.3 291,631 + +1.4 291,631 + +0.2 291,632 - -2.6 291,632 - -1.8 291,642 + +1.0 291,643 - -0.0 291,643 - +1.0 291,643 - +1.0 291,643 - -0.2 291,643 - +0.4 291,643 - -0.8 291,643 - -1.0 291,643 - -1.3 291,643 - -1.0 291,726 - -1.8 291,732 - -0.6 291,732 - -0.4 291,768 + -0.0 291,768 + +0.3 291,821 - -0.0 291,852 - -2.3 291,982 + Pf1N1B4_5532 0.16 -0.0 291,983 - Pf1N1B4_5532 0.16 -1.6 291,983 - Pf1N1B4_5532 0.16 -1.3 292,001 - Pf1N1B4_5532 0.17 -1.0 292,080 - Pf1N1B4_5532 0.21 -0.2 292,241 + Pf1N1B4_5532 0.28 -0.0 292,242 - Pf1N1B4_5532 0.28 +2.4 292,242 - Pf1N1B4_5532 0.28 +0.7 292,511 - -1.0 292,685 - Pf1N1B4_5532 0.49 -0.4 292,939 + Pf1N1B4_5532 0.61 +1.3 292,940 - Pf1N1B4_5532 0.62 -1.0 292,940 - Pf1N1B4_5532 0.62 +0.8 292,940 - Pf1N1B4_5532 0.62 +0.6 293,219 - Pf1N1B4_5532 0.75 -1.6 293,219 - Pf1N1B4_5532 0.75 -1.6 293,249 - Pf1N1B4_5532 0.76 +0.7 293,249 - Pf1N1B4_5532 0.76 -0.3 293,299 + Pf1N1B4_5532 0.79 +2.2 293,300 - Pf1N1B4_5532 0.79 +1.3 293,314 - Pf1N1B4_5532 0.79 +0.2 293,314 - Pf1N1B4_5532 0.79 -0.4 293,314 - Pf1N1B4_5532 0.79 -1.6 293,325 + Pf1N1B4_5532 0.80 +1.6 293,326 - Pf1N1B4_5532 0.80 -0.5 293,333 - Pf1N1B4_5532 0.80 -0.6 293,520 + Pf1N1B4_5532 0.89 -0.0 293,630 + +0.3 293,630 + -0.1 293,706 + +0.6 293,752 + -1.8 293,753 - -0.0 293,756 + -1.0 293,756 + +1.7 293,756 + +0.7 293,757 - -1.3 293,787 + -1.0 293,788 - -3.2 293,788 - -0.0 293,788 - -1.2 293,823 + -0.8 293,851 - +1.0 293,887 + -0.6 293,888 - +0.6 293,888 - +1.2 293,898 - +1.0 293,898 - -1.0 293,901 + -1.0 293,901 + +1.3 293,901 + -2.3 293,907 + -1.0 293,907 + -0.6 293,986 - +0.8 293,998 + -0.6 293,998 + +0.7 293,998 + -0.0 293,999 - -2.0 293,999 - -2.0 294,001 + -1.6 294,002 - +1.6 294,002 - -0.0 294,002 - +0.4 294,095 + -0.6 294,122 + -0.7 294,122 + -0.0 294,122 + -0.4 294,122 + +0.6 294,122 + -1.2 294,122 + +1.1 294,445 + +0.5 294,448 + +0.2 294,448 + -0.4 294,448 + +1.2 294,448 + +1.0 294,476 + +0.7 294,479 + -1.0 294,479 + +0.6 294,479 + +0.4 294,479 + +1.6 294,479 + -0.0 294,479 + +0.4 294,514 + +1.0 294,575 + +1.4 294,609 + -0.0 294,609 + -0.0 294,610 - +0.7 294,736 - -0.0
Or see this region's nucleotide sequence