Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt
Pf1N1B4_5451 - hypothetical protein, at 197,785 to 198,030
_5451
Position (kb) 197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 196.835 kb on + strand at 196.835 kb on + strand at 196.835 kb on + strand at 196.836 kb on - strand at 196.876 kb on + strand at 197.012 kb on + strand at 197.012 kb on + strand at 197.013 kb on - strand at 197.039 kb on + strand at 197.040 kb on - strand at 197.154 kb on + strand at 197.162 kb on + strand at 197.162 kb on + strand at 197.163 kb on - strand at 197.241 kb on + strand at 197.241 kb on + strand at 197.241 kb on + strand at 197.241 kb on + strand at 197.241 kb on + strand at 197.242 kb on - strand at 197.310 kb on + strand at 197.310 kb on + strand at 197.310 kb on + strand at 197.310 kb on + strand at 197.310 kb on + strand at 197.311 kb on - strand at 197.311 kb on - strand at 197.311 kb on - strand at 197.311 kb on - strand at 197.339 kb on - strand at 197.339 kb on - strand at 197.339 kb on - strand at 197.342 kb on + strand at 197.342 kb on + strand at 197.342 kb on + strand at 197.342 kb on + strand at 197.342 kb on + strand at 197.343 kb on - strand at 197.343 kb on - strand at 197.343 kb on - strand at 197.343 kb on - strand at 197.343 kb on - strand at 197.343 kb on - strand at 197.343 kb on - strand at 197.343 kb on - strand at 197.378 kb on - strand at 197.378 kb on - strand at 197.388 kb on + strand at 197.422 kb on + strand at 197.425 kb on + strand at 197.425 kb on + strand at 197.475 kb on - strand at 197.537 kb on + strand at 197.537 kb on + strand at 197.537 kb on + strand at 197.562 kb on - strand at 197.562 kb on - strand at 197.623 kb on + strand at 197.623 kb on + strand at 197.624 kb on - strand at 197.639 kb on + strand at 197.735 kb on + strand at 197.741 kb on + strand at 197.741 kb on + strand at 197.741 kb on + strand at 197.741 kb on + strand at 197.780 kb on + strand at 197.781 kb on - strand at 197.781 kb on - strand at 197.809 kb on - strand at 197.856 kb on + strand, within Pf1N1B4_5451 at 197.857 kb on - strand, within Pf1N1B4_5451 at 197.943 kb on - strand, within Pf1N1B4_5451 at 197.957 kb on + strand at 197.957 kb on + strand, within Pf1N1B4_5451 at 197.992 kb on + strand, within Pf1N1B4_5451 at 197.992 kb on + strand, within Pf1N1B4_5451 at 197.992 kb on + strand, within Pf1N1B4_5451 at 197.992 kb on + strand, within Pf1N1B4_5451 at 198.028 kb on + strand at 198.029 kb on - strand at 198.029 kb on - strand at 198.029 kb on - strand at 198.072 kb on + strand at 198.072 kb on + strand at 198.073 kb on - strand at 198.081 kb on + strand at 198.206 kb on + strand at 198.206 kb on + strand at 198.273 kb on + strand at 198.273 kb on + strand at 198.273 kb on + strand at 198.282 kb on + strand at 198.283 kb on - strand at 198.283 kb on - strand at 198.283 kb on - strand at 198.309 kb on + strand at 198.309 kb on + strand at 198.309 kb on + strand at 198.404 kb on - strand at 198.441 kb on + strand at 198.441 kb on + strand at 198.441 kb on + strand at 198.441 kb on + strand at 198.441 kb on + strand at 198.441 kb on + strand at 198.441 kb on + strand at 198.442 kb on - strand at 198.442 kb on - strand at 198.442 kb on - strand at 198.442 kb on - strand at 198.442 kb on - strand at 198.635 kb on + strand at 198.636 kb on - strand at 198.636 kb on - strand at 198.661 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.793 kb on + strand at 198.793 kb on + strand at 198.793 kb on + strand at 198.793 kb on + strand at 198.793 kb on + strand at 198.794 kb on - strand at 198.895 kb on - strand at 198.981 kb on + strand at 198.982 kb on - strand at 198.982 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml remove 196,835 + -0.6 196,835 + -1.0 196,835 + -0.4 196,836 - -0.0 196,876 + +1.2 197,012 + -0.0 197,012 + -1.2 197,013 - -0.0 197,039 + +0.1 197,040 - +0.4 197,154 + +0.9 197,162 + +0.7 197,162 + +0.6 197,163 - -2.3 197,241 + +3.2 197,241 + +0.8 197,241 + -1.0 197,241 + -2.8 197,241 + +0.6 197,242 - +0.8 197,310 + +1.0 197,310 + +1.8 197,310 + -0.0 197,310 + -2.6 197,310 + -1.0 197,311 - +1.0 197,311 - -0.7 197,311 - +1.2 197,311 - -2.0 197,339 - -0.5 197,339 - +0.2 197,339 - +0.2 197,342 + -0.0 197,342 + +0.1 197,342 + -2.8 197,342 + +0.6 197,342 + +1.2 197,343 - -0.4 197,343 - -1.0 197,343 - -1.6 197,343 - -1.0 197,343 - -2.6 197,343 - -0.0 197,343 - -1.0 197,343 - -2.3 197,378 - -0.0 197,378 - -0.0 197,388 + -1.8 197,422 + -1.2 197,425 + -2.3 197,425 + -1.3 197,475 - +1.8 197,537 + -0.3 197,537 + -0.0 197,537 + -1.0 197,562 - +3.2 197,562 - -0.0 197,623 + +0.7 197,623 + -1.0 197,624 - +0.3 197,639 + -0.0 197,735 + -0.0 197,741 + -1.0 197,741 + -1.6 197,741 + +0.5 197,741 + -0.8 197,780 + -1.0 197,781 - -0.0 197,781 - +1.3 197,809 - -1.0 197,856 + Pf1N1B4_5451 0.29 -0.7 197,857 - Pf1N1B4_5451 0.29 -0.0 197,943 - Pf1N1B4_5451 0.64 +0.7 197,957 + -0.0 197,957 + Pf1N1B4_5451 0.70 +0.4 197,992 + Pf1N1B4_5451 0.84 -2.6 197,992 + Pf1N1B4_5451 0.84 -2.3 197,992 + Pf1N1B4_5451 0.84 -1.6 197,992 + Pf1N1B4_5451 0.84 -0.6 198,028 + -1.2 198,029 - -1.0 198,029 - -2.0 198,029 - -0.0 198,072 + -0.6 198,072 + -0.2 198,073 - +1.6 198,081 + +1.2 198,206 + +0.5 198,206 + -1.6 198,273 + -0.4 198,273 + -0.0 198,273 + -1.0 198,282 + +1.0 198,283 - -0.4 198,283 - +0.6 198,283 - +0.6 198,309 + -2.3 198,309 + +0.7 198,309 + -0.4 198,404 - +0.3 198,441 + -1.6 198,441 + +0.3 198,441 + +1.6 198,441 + +0.3 198,441 + +1.0 198,441 + -0.7 198,441 + -1.0 198,442 - +0.4 198,442 - -0.3 198,442 - +1.0 198,442 - +0.6 198,442 - -0.0 198,635 + -1.8 198,636 - +0.8 198,636 - -0.6 198,661 + +2.1 198,709 + +0.4 198,709 + -1.3 198,793 + +1.1 198,793 + +2.0 198,793 + -2.0 198,793 + -0.2 198,793 + -0.3 198,794 - +1.0 198,895 - +1.7 198,981 + -0.9 198,982 - +0.4 198,982 - +2.0
Or see this region's nucleotide sequence