Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4561 and Pf1N1B4_4562 are separated by 278 nucleotides Pf1N1B4_4562 and Pf1N1B4_4563 are separated by 206 nucleotides
Pf1N1B4_4561 - Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17), at 5,031,908 to 5,032,483
_4561
Pf1N1B4_4562 - Serine transporter, at 5,032,762 to 5,034,042
_4562
Pf1N1B4_4563 - Sulfate transporter, at 5,034,249 to 5,035,925
_4563
Position (kb)
5032
5033
5034
5035 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5031.791 kb on + strand at 5031.843 kb on - strand at 5032.074 kb on + strand, within Pf1N1B4_4561 at 5032.075 kb on - strand, within Pf1N1B4_4561 at 5032.075 kb on - strand, within Pf1N1B4_4561 at 5032.077 kb on + strand, within Pf1N1B4_4561 at 5032.335 kb on - strand, within Pf1N1B4_4561 at 5032.410 kb on + strand, within Pf1N1B4_4561 at 5032.410 kb on + strand, within Pf1N1B4_4561 at 5032.410 kb on + strand, within Pf1N1B4_4561 at 5032.410 kb on + strand, within Pf1N1B4_4561 at 5032.410 kb on + strand, within Pf1N1B4_4561 at 5032.411 kb on - strand at 5032.411 kb on - strand, within Pf1N1B4_4561 at 5032.411 kb on - strand, within Pf1N1B4_4561 at 5032.414 kb on + strand, within Pf1N1B4_4561 at 5032.415 kb on - strand, within Pf1N1B4_4561 at 5032.439 kb on - strand at 5032.583 kb on - strand at 5032.635 kb on - strand at 5032.795 kb on + strand at 5032.796 kb on - strand at 5033.001 kb on - strand, within Pf1N1B4_4562 at 5033.087 kb on - strand at 5033.119 kb on + strand at 5033.208 kb on - strand, within Pf1N1B4_4562 at 5033.700 kb on + strand, within Pf1N1B4_4562 at 5033.700 kb on + strand, within Pf1N1B4_4562 at 5033.725 kb on + strand, within Pf1N1B4_4562 at 5034.025 kb on + strand at 5034.026 kb on - strand at 5034.048 kb on - strand at 5034.139 kb on + strand at 5034.293 kb on - strand at 5034.313 kb on + strand at 5034.314 kb on - strand at 5034.314 kb on - strand at 5034.857 kb on - strand at 5034.988 kb on + strand, within Pf1N1B4_4563 at 5035.029 kb on + strand, within Pf1N1B4_4563
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml remove 5,031,791 + -1.8 5,031,843 - +1.9 5,032,074 + Pf1N1B4_4561 0.29 +0.8 5,032,075 - Pf1N1B4_4561 0.29 -3.4 5,032,075 - Pf1N1B4_4561 0.29 +0.5 5,032,077 + Pf1N1B4_4561 0.29 +1.7 5,032,335 - Pf1N1B4_4561 0.74 +1.2 5,032,410 + Pf1N1B4_4561 0.87 -1.0 5,032,410 + Pf1N1B4_4561 0.87 +0.1 5,032,410 + Pf1N1B4_4561 0.87 +0.7 5,032,410 + Pf1N1B4_4561 0.87 +0.5 5,032,410 + Pf1N1B4_4561 0.87 +1.0 5,032,411 - -2.6 5,032,411 - Pf1N1B4_4561 0.87 -0.3 5,032,411 - Pf1N1B4_4561 0.87 +1.7 5,032,414 + Pf1N1B4_4561 0.88 -2.6 5,032,415 - Pf1N1B4_4561 0.88 -0.6 5,032,439 - +0.4 5,032,583 - -1.6 5,032,635 - +1.4 5,032,795 + +0.4 5,032,796 - +1.0 5,033,001 - Pf1N1B4_4562 0.19 +2.7 5,033,087 - +2.2 5,033,119 + +0.0 5,033,208 - Pf1N1B4_4562 0.35 +0.0 5,033,700 + Pf1N1B4_4562 0.73 +0.0 5,033,700 + Pf1N1B4_4562 0.73 +0.8 5,033,725 + Pf1N1B4_4562 0.75 -2.2 5,034,025 + -0.2 5,034,026 - +0.8 5,034,048 - -0.4 5,034,139 + -0.0 5,034,293 - +0.4 5,034,313 + -0.6 5,034,314 - +1.4 5,034,314 - -0.6 5,034,857 - -2.2 5,034,988 + Pf1N1B4_4563 0.44 -3.2 5,035,029 + Pf1N1B4_4563 0.47 -0.6
Or see this region's nucleotide sequence