Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4391 and Pf1N1B4_4392 are separated by 149 nucleotides Pf1N1B4_4392 and Pf1N1B4_4393 are separated by 18 nucleotides
Pf1N1B4_4391 - probable hydrocarbon oxygenase MocD, at 4,851,074 to 4,852,186
_4391
Pf1N1B4_4392 - MocE, at 4,852,336 to 4,852,656
_4392
Pf1N1B4_4393 - Ferredoxin reductase, at 4,852,675 to 4,853,916
_4393
Position (kb)
4852
4853 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4851.446 kb on + strand, within Pf1N1B4_4391 at 4851.446 kb on + strand, within Pf1N1B4_4391 at 4851.737 kb on + strand, within Pf1N1B4_4391 at 4851.737 kb on + strand, within Pf1N1B4_4391 at 4851.765 kb on - strand at 4851.905 kb on + strand, within Pf1N1B4_4391 at 4851.905 kb on + strand, within Pf1N1B4_4391 at 4851.905 kb on + strand, within Pf1N1B4_4391 at 4851.906 kb on - strand, within Pf1N1B4_4391 at 4851.906 kb on - strand, within Pf1N1B4_4391 at 4851.932 kb on + strand, within Pf1N1B4_4391 at 4851.947 kb on + strand, within Pf1N1B4_4391 at 4851.947 kb on + strand at 4851.948 kb on - strand, within Pf1N1B4_4391 at 4852.037 kb on + strand at 4852.037 kb on + strand, within Pf1N1B4_4391 at 4852.106 kb on + strand at 4852.194 kb on + strand at 4852.264 kb on + strand at 4852.264 kb on + strand at 4852.265 kb on - strand at 4852.315 kb on - strand at 4852.320 kb on + strand at 4852.321 kb on - strand at 4852.321 kb on - strand at 4852.321 kb on - strand at 4852.358 kb on + strand at 4852.358 kb on + strand at 4852.358 kb on + strand at 4852.358 kb on + strand at 4852.358 kb on + strand at 4852.359 kb on - strand at 4852.420 kb on + strand, within Pf1N1B4_4392 at 4852.420 kb on + strand, within Pf1N1B4_4392 at 4852.421 kb on - strand, within Pf1N1B4_4392 at 4852.421 kb on - strand at 4852.421 kb on - strand, within Pf1N1B4_4392 at 4852.606 kb on + strand, within Pf1N1B4_4392 at 4852.606 kb on + strand at 4852.606 kb on + strand, within Pf1N1B4_4392 at 4852.606 kb on + strand, within Pf1N1B4_4392 at 4852.607 kb on - strand at 4852.607 kb on - strand, within Pf1N1B4_4392 at 4852.607 kb on - strand, within Pf1N1B4_4392 at 4852.654 kb on + strand at 4852.655 kb on - strand at 4853.329 kb on - strand, within Pf1N1B4_4393
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml remove 4,851,446 + Pf1N1B4_4391 0.33 -1.5 4,851,446 + Pf1N1B4_4391 0.33 +0.2 4,851,737 + Pf1N1B4_4391 0.60 +0.8 4,851,737 + Pf1N1B4_4391 0.60 -0.8 4,851,765 - -0.5 4,851,905 + Pf1N1B4_4391 0.75 -1.5 4,851,905 + Pf1N1B4_4391 0.75 +0.3 4,851,905 + Pf1N1B4_4391 0.75 +0.6 4,851,906 - Pf1N1B4_4391 0.75 +0.7 4,851,906 - Pf1N1B4_4391 0.75 -1.2 4,851,932 + Pf1N1B4_4391 0.77 -2.5 4,851,947 + Pf1N1B4_4391 0.78 +0.8 4,851,947 + -1.5 4,851,948 - Pf1N1B4_4391 0.79 -0.1 4,852,037 + +2.7 4,852,037 + Pf1N1B4_4391 0.87 -0.3 4,852,106 + -0.5 4,852,194 + -1.1 4,852,264 + -1.5 4,852,264 + -1.0 4,852,265 - +0.2 4,852,315 - -2.1 4,852,320 + -1.8 4,852,321 - +1.1 4,852,321 - +0.2 4,852,321 - -0.5 4,852,358 + +1.5 4,852,358 + +1.3 4,852,358 + -0.5 4,852,358 + -0.5 4,852,358 + -2.5 4,852,359 - -0.5 4,852,420 + Pf1N1B4_4392 0.26 -1.5 4,852,420 + Pf1N1B4_4392 0.26 -0.5 4,852,421 - Pf1N1B4_4392 0.26 -1.8 4,852,421 - -0.5 4,852,421 - Pf1N1B4_4392 0.26 +0.7 4,852,606 + Pf1N1B4_4392 0.84 -1.6 4,852,606 + -0.5 4,852,606 + Pf1N1B4_4392 0.84 -0.5 4,852,606 + Pf1N1B4_4392 0.84 -2.1 4,852,607 - -1.5 4,852,607 - Pf1N1B4_4392 0.84 -0.7 4,852,607 - Pf1N1B4_4392 0.84 -2.3 4,852,654 + -1.1 4,852,655 - +1.1 4,853,329 - Pf1N1B4_4393 0.53 -3.1
Or see this region's nucleotide sequence