Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4044

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4043 and Pf1N1B4_4044 are separated by 236 nucleotidesPf1N1B4_4044 and Pf1N1B4_4045 overlap by 8 nucleotides Pf1N1B4_4043 - Type II and III secretion system family protein, at 4,495,666 to 4,496,427 _4043 Pf1N1B4_4044 - GNAT family acetyltransferase YjcF, at 4,496,664 to 4,497,089 _4044 Pf1N1B4_4045 - FIG002776: hypothetical protein, at 4,497,082 to 4,498,251 _4045 Position (kb) 4496 4497 4498Strain fitness (log2 ratio) -2 -1 0 1 2at 4495.668 kb on - strandat 4495.678 kb on - strandat 4495.724 kb on + strandat 4495.724 kb on + strandat 4495.724 kb on + strandat 4495.725 kb on - strandat 4495.837 kb on + strand, within Pf1N1B4_4043at 4495.837 kb on + strandat 4495.838 kb on - strand, within Pf1N1B4_4043at 4495.875 kb on + strand, within Pf1N1B4_4043at 4495.922 kb on + strand, within Pf1N1B4_4043at 4495.974 kb on - strand, within Pf1N1B4_4043at 4496.154 kb on + strand, within Pf1N1B4_4043at 4496.155 kb on - strand, within Pf1N1B4_4043at 4496.428 kb on - strandat 4496.657 kb on - strandat 4496.750 kb on - strand, within Pf1N1B4_4044at 4496.750 kb on - strand, within Pf1N1B4_4044at 4496.750 kb on - strand, within Pf1N1B4_4044at 4497.084 kb on - strandat 4497.839 kb on + strand, within Pf1N1B4_4045

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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4,495,668 - -2.3
4,495,678 - -1.5
4,495,724 + -0.9
4,495,724 + -0.3
4,495,724 + +0.6
4,495,725 - +0.9
4,495,837 + Pf1N1B4_4043 0.22 -0.3
4,495,837 + +1.5
4,495,838 - Pf1N1B4_4043 0.23 +0.5
4,495,875 + Pf1N1B4_4043 0.27 +0.3
4,495,922 + Pf1N1B4_4043 0.34 -0.3
4,495,974 - Pf1N1B4_4043 0.40 +0.4
4,496,154 + Pf1N1B4_4043 0.64 -0.9
4,496,155 - Pf1N1B4_4043 0.64 +0.7
4,496,428 - +2.2
4,496,657 - -1.3
4,496,750 - Pf1N1B4_4044 0.20 +0.3
4,496,750 - Pf1N1B4_4044 0.20 -0.3
4,496,750 - Pf1N1B4_4044 0.20 +0.3
4,497,084 - -0.5
4,497,839 + Pf1N1B4_4045 0.65 -2.6

Or see this region's nucleotide sequence