Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2311

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2309 and Pf1N1B4_2310 are separated by 54 nucleotidesPf1N1B4_2310 and Pf1N1B4_2311 are separated by 114 nucleotidesPf1N1B4_2311 and Pf1N1B4_2312 are separated by 148 nucleotidesPf1N1B4_2312 and Pf1N1B4_2313 are separated by 115 nucleotides Pf1N1B4_2309 - Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23), at 2,630,376 to 2,631,188 _2309 Pf1N1B4_2310 - Cation/multidrug efflux pump, at 2,631,243 to 2,631,566 _2310 Pf1N1B4_2311 - 4Fe-4S ferredoxin, iron-sulfur binding, at 2,631,681 to 2,631,932 _2311 Pf1N1B4_2312 - Phosphopantetheine adenylyltransferase (EC 2.7.7.3), at 2,632,081 to 2,632,560 _2312 Pf1N1B4_2313 - FIG022869: Oxidoreductase, GMC family, at 2,632,676 to 2,634,271 _2313 Position (kb) 2631 2632Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2630.692 kb on - strand, within Pf1N1B4_2309at 2630.788 kb on + strand, within Pf1N1B4_2309at 2630.788 kb on + strand, within Pf1N1B4_2309at 2630.788 kb on + strand, within Pf1N1B4_2309at 2630.788 kb on + strand, within Pf1N1B4_2309at 2630.788 kb on + strand, within Pf1N1B4_2309at 2630.788 kb on + strand, within Pf1N1B4_2309at 2630.789 kb on - strand, within Pf1N1B4_2309at 2630.789 kb on - strandat 2630.789 kb on - strand, within Pf1N1B4_2309at 2630.839 kb on + strand, within Pf1N1B4_2309at 2630.885 kb on + strand, within Pf1N1B4_2309at 2630.885 kb on + strand, within Pf1N1B4_2309at 2630.885 kb on + strand, within Pf1N1B4_2309at 2630.885 kb on + strand, within Pf1N1B4_2309at 2630.885 kb on + strand, within Pf1N1B4_2309at 2630.890 kb on - strand, within Pf1N1B4_2309at 2630.961 kb on + strand, within Pf1N1B4_2309at 2630.962 kb on - strand, within Pf1N1B4_2309at 2631.063 kb on + strand, within Pf1N1B4_2309at 2631.079 kb on + strand, within Pf1N1B4_2309at 2631.079 kb on + strand, within Pf1N1B4_2309at 2631.079 kb on + strand, within Pf1N1B4_2309at 2631.079 kb on + strand, within Pf1N1B4_2309at 2631.079 kb on + strand, within Pf1N1B4_2309at 2631.079 kb on + strand, within Pf1N1B4_2309at 2631.079 kb on + strand, within Pf1N1B4_2309at 2631.079 kb on + strand, within Pf1N1B4_2309at 2631.079 kb on + strand, within Pf1N1B4_2309at 2631.080 kb on - strand, within Pf1N1B4_2309at 2631.080 kb on - strand, within Pf1N1B4_2309at 2631.080 kb on - strand, within Pf1N1B4_2309at 2631.080 kb on - strand, within Pf1N1B4_2309at 2631.080 kb on - strand, within Pf1N1B4_2309at 2631.080 kb on - strand, within Pf1N1B4_2309at 2631.080 kb on - strand, within Pf1N1B4_2309at 2631.087 kb on + strandat 2631.087 kb on + strand, within Pf1N1B4_2309at 2631.196 kb on + strandat 2631.203 kb on + strandat 2631.203 kb on + strandat 2631.203 kb on + strandat 2631.203 kb on + strandat 2631.203 kb on + strandat 2631.203 kb on + strandat 2631.203 kb on + strandat 2631.204 kb on - strandat 2631.204 kb on - strandat 2631.204 kb on - strandat 2631.204 kb on - strandat 2631.204 kb on - strandat 2631.204 kb on - strandat 2631.205 kb on + strandat 2631.205 kb on + strandat 2631.571 kb on + strandat 2631.571 kb on + strandat 2631.571 kb on + strandat 2631.571 kb on + strandat 2631.571 kb on + strandat 2631.571 kb on + strandat 2631.599 kb on + strandat 2631.600 kb on - strandat 2631.600 kb on - strandat 2631.689 kb on + strandat 2631.707 kb on - strand, within Pf1N1B4_2311at 2631.707 kb on - strand, within Pf1N1B4_2311at 2631.936 kb on - strandat 2631.969 kb on - strandat 2632.056 kb on - strandat 2632.082 kb on + strandat 2632.082 kb on + strandat 2632.089 kb on + strandat 2632.649 kb on + strandat 2632.649 kb on + strandat 2632.650 kb on - strandat 2632.651 kb on + strandat 2632.651 kb on + strandat 2632.651 kb on + strandat 2632.651 kb on + strandat 2632.652 kb on - strandat 2632.652 kb on - strandat 2632.664 kb on + strandat 2632.665 kb on - strandat 2632.665 kb on - strandat 2632.902 kb on + strand, within Pf1N1B4_2313

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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2,630,692 - Pf1N1B4_2309 0.39 +0.5
2,630,788 + Pf1N1B4_2309 0.51 -0.1
2,630,788 + Pf1N1B4_2309 0.51 -0.8
2,630,788 + Pf1N1B4_2309 0.51 -1.1
2,630,788 + Pf1N1B4_2309 0.51 -0.9
2,630,788 + Pf1N1B4_2309 0.51 +0.9
2,630,788 + Pf1N1B4_2309 0.51 +0.3
2,630,789 - Pf1N1B4_2309 0.51 -0.1
2,630,789 - +0.5
2,630,789 - Pf1N1B4_2309 0.51 +2.3
2,630,839 + Pf1N1B4_2309 0.57 +0.9
2,630,885 + Pf1N1B4_2309 0.63 +1.9
2,630,885 + Pf1N1B4_2309 0.63 -1.1
2,630,885 + Pf1N1B4_2309 0.63 -0.2
2,630,885 + Pf1N1B4_2309 0.63 -1.1
2,630,885 + Pf1N1B4_2309 0.63 +1.8
2,630,890 - Pf1N1B4_2309 0.63 -0.9
2,630,961 + Pf1N1B4_2309 0.72 +0.5
2,630,962 - Pf1N1B4_2309 0.72 -1.9
2,631,063 + Pf1N1B4_2309 0.85 -2.3
2,631,079 + Pf1N1B4_2309 0.86 +1.2
2,631,079 + Pf1N1B4_2309 0.86 -0.5
2,631,079 + Pf1N1B4_2309 0.86 +0.7
2,631,079 + Pf1N1B4_2309 0.86 -1.1
2,631,079 + Pf1N1B4_2309 0.86 +0.9
2,631,079 + Pf1N1B4_2309 0.86 +1.8
2,631,079 + Pf1N1B4_2309 0.86 +0.5
2,631,079 + Pf1N1B4_2309 0.86 -0.1
2,631,079 + Pf1N1B4_2309 0.86 +1.3
2,631,080 - Pf1N1B4_2309 0.87 -0.5
2,631,080 - Pf1N1B4_2309 0.87 +0.9
2,631,080 - Pf1N1B4_2309 0.87 +1.5
2,631,080 - Pf1N1B4_2309 0.87 +0.2
2,631,080 - Pf1N1B4_2309 0.87 +1.0
2,631,080 - Pf1N1B4_2309 0.87 +1.6
2,631,080 - Pf1N1B4_2309 0.87 +1.1
2,631,087 + +0.5
2,631,087 + Pf1N1B4_2309 0.87 -1.1
2,631,196 + +3.1
2,631,203 + +0.5
2,631,203 + +1.9
2,631,203 + -1.9
2,631,203 + +1.1
2,631,203 + +0.8
2,631,203 + +0.5
2,631,203 + -0.0
2,631,204 - -1.1
2,631,204 - -0.5
2,631,204 - -0.5
2,631,204 - +0.2
2,631,204 - +0.5
2,631,204 - +0.1
2,631,205 + -1.1
2,631,205 + +0.1
2,631,571 + +0.7
2,631,571 + +0.5
2,631,571 + +2.8
2,631,571 + +0.3
2,631,571 + -1.9
2,631,571 + +2.1
2,631,599 + +1.1
2,631,600 - +1.5
2,631,600 - +0.5
2,631,689 + +0.5
2,631,707 - Pf1N1B4_2311 0.10 +1.2
2,631,707 - Pf1N1B4_2311 0.10 +2.3
2,631,936 - +0.6
2,631,969 - -2.2
2,632,056 - -0.1
2,632,082 + -0.5
2,632,082 + -0.1
2,632,089 + -1.9
2,632,649 + +0.5
2,632,649 + +1.5
2,632,650 - -0.1
2,632,651 + -3.0
2,632,651 + +1.0
2,632,651 + -2.3
2,632,651 + -2.1
2,632,652 - -0.5
2,632,652 - -0.3
2,632,664 + +0.3
2,632,665 - +2.5
2,632,665 - -0.3
2,632,902 + Pf1N1B4_2313 0.14 +0.5

Or see this region's nucleotide sequence