Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1807

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1805 and Pf1N1B4_1806 overlap by 4 nucleotidesPf1N1B4_1806 and Pf1N1B4_1807 are separated by 10 nucleotidesPf1N1B4_1807 and Pf1N1B4_1808 are separated by 29 nucleotidesPf1N1B4_1808 and Pf1N1B4_1809 are separated by 135 nucleotides Pf1N1B4_1805 - PROBABLE REMNANT OF A TRANSPOSASE GENE PROTEIN, at 2,072,919 to 2,073,695 _1805 Pf1N1B4_1806 - FIG00953743: hypothetical protein, at 2,073,692 to 2,074,624 _1806 Pf1N1B4_1807 - Non-ribosomal peptide synthetase modules and related proteins, at 2,074,635 to 2,078,069 _1807 Pf1N1B4_1808 - FIG00958473: hypothetical protein, at 2,078,099 to 2,078,569 _1808 Pf1N1B4_1809 - Chemotactic transducer, at 2,078,705 to 2,080,642 _1809 Position (kb) 2074 2075 2076 2077 2078 2079Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2073.885 kb on - strand, within Pf1N1B4_1806at 2074.015 kb on - strand, within Pf1N1B4_1806at 2074.015 kb on - strand, within Pf1N1B4_1806at 2074.015 kb on - strand, within Pf1N1B4_1806at 2074.025 kb on + strand, within Pf1N1B4_1806at 2074.401 kb on - strand, within Pf1N1B4_1806at 2074.401 kb on - strand, within Pf1N1B4_1806at 2074.509 kb on - strand, within Pf1N1B4_1806at 2074.509 kb on - strand, within Pf1N1B4_1806at 2074.610 kb on + strandat 2074.823 kb on - strandat 2074.823 kb on - strandat 2074.823 kb on - strandat 2075.244 kb on + strand, within Pf1N1B4_1807at 2075.367 kb on + strand, within Pf1N1B4_1807at 2075.367 kb on + strand, within Pf1N1B4_1807at 2075.368 kb on - strand, within Pf1N1B4_1807at 2075.406 kb on + strand, within Pf1N1B4_1807at 2075.406 kb on + strand, within Pf1N1B4_1807at 2075.406 kb on + strand, within Pf1N1B4_1807at 2075.406 kb on + strand, within Pf1N1B4_1807at 2075.619 kb on + strand, within Pf1N1B4_1807at 2075.619 kb on + strand, within Pf1N1B4_1807at 2075.619 kb on + strand, within Pf1N1B4_1807at 2075.619 kb on + strand, within Pf1N1B4_1807at 2075.619 kb on + strand, within Pf1N1B4_1807at 2075.619 kb on + strand, within Pf1N1B4_1807at 2075.620 kb on - strand, within Pf1N1B4_1807at 2075.775 kb on - strand, within Pf1N1B4_1807at 2076.017 kb on + strand, within Pf1N1B4_1807at 2076.017 kb on + strand, within Pf1N1B4_1807at 2076.017 kb on + strand, within Pf1N1B4_1807at 2076.017 kb on + strand, within Pf1N1B4_1807at 2076.017 kb on + strand, within Pf1N1B4_1807at 2076.017 kb on + strand, within Pf1N1B4_1807at 2076.017 kb on + strand, within Pf1N1B4_1807at 2076.017 kb on + strand, within Pf1N1B4_1807at 2076.017 kb on + strand, within Pf1N1B4_1807at 2076.018 kb on - strand, within Pf1N1B4_1807at 2076.018 kb on - strand, within Pf1N1B4_1807at 2076.018 kb on - strand, within Pf1N1B4_1807at 2076.018 kb on - strand, within Pf1N1B4_1807at 2076.021 kb on + strand, within Pf1N1B4_1807at 2076.021 kb on + strand, within Pf1N1B4_1807at 2076.021 kb on + strand, within Pf1N1B4_1807at 2076.022 kb on - strand, within Pf1N1B4_1807at 2076.022 kb on - strand, within Pf1N1B4_1807at 2076.022 kb on - strand, within Pf1N1B4_1807at 2076.022 kb on - strand, within Pf1N1B4_1807at 2076.174 kb on + strand, within Pf1N1B4_1807at 2076.174 kb on + strand, within Pf1N1B4_1807at 2076.174 kb on + strand, within Pf1N1B4_1807at 2076.174 kb on + strand, within Pf1N1B4_1807at 2076.174 kb on + strand, within Pf1N1B4_1807at 2076.174 kb on + strand, within Pf1N1B4_1807at 2076.174 kb on + strand, within Pf1N1B4_1807at 2076.174 kb on + strand, within Pf1N1B4_1807at 2076.175 kb on - strand, within Pf1N1B4_1807at 2076.175 kb on - strand, within Pf1N1B4_1807at 2076.175 kb on - strand, within Pf1N1B4_1807at 2076.175 kb on - strand, within Pf1N1B4_1807at 2076.424 kb on + strand, within Pf1N1B4_1807at 2076.424 kb on + strand, within Pf1N1B4_1807at 2076.424 kb on + strand, within Pf1N1B4_1807at 2076.425 kb on - strand, within Pf1N1B4_1807at 2076.425 kb on - strand, within Pf1N1B4_1807at 2076.425 kb on - strand, within Pf1N1B4_1807at 2076.463 kb on - strand, within Pf1N1B4_1807at 2076.543 kb on + strand, within Pf1N1B4_1807at 2076.543 kb on + strand, within Pf1N1B4_1807at 2076.543 kb on + strand, within Pf1N1B4_1807at 2076.561 kb on + strand, within Pf1N1B4_1807at 2076.561 kb on + strand, within Pf1N1B4_1807at 2076.562 kb on - strand, within Pf1N1B4_1807at 2076.562 kb on - strand, within Pf1N1B4_1807at 2076.586 kb on - strand, within Pf1N1B4_1807at 2076.991 kb on + strand, within Pf1N1B4_1807at 2076.991 kb on + strand, within Pf1N1B4_1807at 2076.991 kb on + strand, within Pf1N1B4_1807at 2076.991 kb on + strand, within Pf1N1B4_1807at 2076.991 kb on + strand, within Pf1N1B4_1807at 2076.991 kb on + strand, within Pf1N1B4_1807at 2076.991 kb on + strand, within Pf1N1B4_1807at 2076.991 kb on + strand, within Pf1N1B4_1807at 2076.991 kb on + strand, within Pf1N1B4_1807at 2076.991 kb on + strand, within Pf1N1B4_1807at 2076.991 kb on + strand, within Pf1N1B4_1807at 2076.991 kb on + strand, within Pf1N1B4_1807at 2076.992 kb on - strand, within Pf1N1B4_1807at 2076.992 kb on - strand, within Pf1N1B4_1807at 2076.992 kb on - strand, within Pf1N1B4_1807at 2076.992 kb on - strand, within Pf1N1B4_1807at 2076.992 kb on - strand, within Pf1N1B4_1807at 2076.992 kb on - strand, within Pf1N1B4_1807at 2076.992 kb on - strand, within Pf1N1B4_1807at 2076.992 kb on - strand, within Pf1N1B4_1807at 2076.992 kb on - strand, within Pf1N1B4_1807at 2076.995 kb on + strand, within Pf1N1B4_1807at 2076.995 kb on + strand, within Pf1N1B4_1807at 2076.995 kb on + strand, within Pf1N1B4_1807at 2076.995 kb on + strand, within Pf1N1B4_1807at 2076.995 kb on + strand, within Pf1N1B4_1807at 2076.995 kb on + strand, within Pf1N1B4_1807at 2076.996 kb on - strand, within Pf1N1B4_1807at 2076.996 kb on - strand, within Pf1N1B4_1807at 2076.996 kb on - strand, within Pf1N1B4_1807at 2076.996 kb on - strand, within Pf1N1B4_1807at 2076.996 kb on - strand, within Pf1N1B4_1807at 2076.996 kb on - strand, within Pf1N1B4_1807at 2076.996 kb on - strand, within Pf1N1B4_1807at 2076.996 kb on - strand, within Pf1N1B4_1807at 2076.996 kb on - strandat 2077.033 kb on + strand, within Pf1N1B4_1807at 2077.300 kb on - strand, within Pf1N1B4_1807at 2077.467 kb on + strand, within Pf1N1B4_1807at 2077.467 kb on + strand, within Pf1N1B4_1807at 2077.467 kb on + strand, within Pf1N1B4_1807at 2077.467 kb on + strand, within Pf1N1B4_1807at 2077.467 kb on + strand, within Pf1N1B4_1807at 2077.467 kb on + strand, within Pf1N1B4_1807at 2077.467 kb on + strand, within Pf1N1B4_1807at 2077.468 kb on - strand, within Pf1N1B4_1807at 2077.468 kb on - strand, within Pf1N1B4_1807at 2077.483 kb on - strand, within Pf1N1B4_1807at 2077.483 kb on - strand, within Pf1N1B4_1807at 2077.794 kb on + strandat 2077.794 kb on + strandat 2077.912 kb on - strandat 2077.912 kb on - strandat 2078.043 kb on + strandat 2078.043 kb on + strandat 2078.044 kb on - strandat 2078.044 kb on - strandat 2078.044 kb on - strandat 2078.104 kb on + strandat 2078.104 kb on + strandat 2078.104 kb on + strandat 2078.105 kb on - strandat 2078.105 kb on - strandat 2078.105 kb on - strandat 2078.105 kb on - strandat 2078.105 kb on - strandat 2078.105 kb on - strandat 2078.105 kb on - strandat 2078.170 kb on - strand, within Pf1N1B4_1808at 2078.375 kb on + strand, within Pf1N1B4_1808at 2078.375 kb on + strand, within Pf1N1B4_1808at 2078.375 kb on + strand, within Pf1N1B4_1808at 2078.375 kb on + strand, within Pf1N1B4_1808at 2078.375 kb on + strand, within Pf1N1B4_1808at 2078.375 kb on + strand, within Pf1N1B4_1808at 2078.375 kb on + strandat 2078.375 kb on + strand, within Pf1N1B4_1808at 2078.375 kb on + strand, within Pf1N1B4_1808at 2078.375 kb on + strand, within Pf1N1B4_1808at 2078.375 kb on + strand, within Pf1N1B4_1808at 2078.375 kb on + strand, within Pf1N1B4_1808at 2078.376 kb on - strand, within Pf1N1B4_1808at 2078.376 kb on - strand, within Pf1N1B4_1808at 2078.376 kb on - strand, within Pf1N1B4_1808at 2078.376 kb on - strand, within Pf1N1B4_1808at 2078.376 kb on - strand, within Pf1N1B4_1808at 2078.376 kb on - strand, within Pf1N1B4_1808at 2078.376 kb on - strand, within Pf1N1B4_1808at 2078.376 kb on - strand, within Pf1N1B4_1808at 2078.376 kb on - strand, within Pf1N1B4_1808at 2078.392 kb on - strand, within Pf1N1B4_1808at 2078.595 kb on + strandat 2078.595 kb on + strandat 2078.595 kb on + strandat 2078.595 kb on + strandat 2078.601 kb on + strandat 2078.637 kb on + strandat 2078.637 kb on + strandat 2078.638 kb on - strandat 2078.638 kb on - strandat 2078.719 kb on + strandat 2078.719 kb on + strandat 2078.719 kb on + strandat 2078.719 kb on + strandat 2078.719 kb on + strandat 2078.719 kb on + strandat 2078.720 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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2,073,885 - Pf1N1B4_1806 0.21 +0.0
2,074,015 - Pf1N1B4_1806 0.35 +0.0
2,074,015 - Pf1N1B4_1806 0.35 -2.9
2,074,015 - Pf1N1B4_1806 0.35 -0.4
2,074,025 + Pf1N1B4_1806 0.36 +0.6
2,074,401 - Pf1N1B4_1806 0.76 -0.8
2,074,401 - Pf1N1B4_1806 0.76 -0.9
2,074,509 - Pf1N1B4_1806 0.88 +1.6
2,074,509 - Pf1N1B4_1806 0.88 -0.2
2,074,610 + -0.6
2,074,823 - -2.0
2,074,823 - +0.4
2,074,823 - -1.0
2,075,244 + Pf1N1B4_1807 0.18 +1.4
2,075,367 + Pf1N1B4_1807 0.21 -0.4
2,075,367 + Pf1N1B4_1807 0.21 -1.0
2,075,368 - Pf1N1B4_1807 0.21 -1.1
2,075,406 + Pf1N1B4_1807 0.22 +0.1
2,075,406 + Pf1N1B4_1807 0.22 +0.2
2,075,406 + Pf1N1B4_1807 0.22 +0.6
2,075,406 + Pf1N1B4_1807 0.22 -0.6
2,075,619 + Pf1N1B4_1807 0.29 +2.7
2,075,619 + Pf1N1B4_1807 0.29 -1.1
2,075,619 + Pf1N1B4_1807 0.29 +3.2
2,075,619 + Pf1N1B4_1807 0.29 +0.9
2,075,619 + Pf1N1B4_1807 0.29 +0.6
2,075,619 + Pf1N1B4_1807 0.29 +0.1
2,075,620 - Pf1N1B4_1807 0.29 -0.4
2,075,775 - Pf1N1B4_1807 0.33 -1.6
2,076,017 + Pf1N1B4_1807 0.40 +0.8
2,076,017 + Pf1N1B4_1807 0.40 +1.0
2,076,017 + Pf1N1B4_1807 0.40 +0.9
2,076,017 + Pf1N1B4_1807 0.40 -1.0
2,076,017 + Pf1N1B4_1807 0.40 +0.6
2,076,017 + Pf1N1B4_1807 0.40 +1.0
2,076,017 + Pf1N1B4_1807 0.40 -1.4
2,076,017 + Pf1N1B4_1807 0.40 +0.1
2,076,017 + Pf1N1B4_1807 0.40 -1.0
2,076,018 - Pf1N1B4_1807 0.40 +0.6
2,076,018 - Pf1N1B4_1807 0.40 -0.1
2,076,018 - Pf1N1B4_1807 0.40 +1.6
2,076,018 - Pf1N1B4_1807 0.40 +2.4
2,076,021 + Pf1N1B4_1807 0.40 -1.2
2,076,021 + Pf1N1B4_1807 0.40 -0.1
2,076,021 + Pf1N1B4_1807 0.40 +2.9
2,076,022 - Pf1N1B4_1807 0.40 -1.4
2,076,022 - Pf1N1B4_1807 0.40 -2.0
2,076,022 - Pf1N1B4_1807 0.40 +0.6
2,076,022 - Pf1N1B4_1807 0.40 -2.2
2,076,174 + Pf1N1B4_1807 0.45 -1.0
2,076,174 + Pf1N1B4_1807 0.45 +2.0
2,076,174 + Pf1N1B4_1807 0.45 +1.8
2,076,174 + Pf1N1B4_1807 0.45 +1.0
2,076,174 + Pf1N1B4_1807 0.45 -2.6
2,076,174 + Pf1N1B4_1807 0.45 +0.6
2,076,174 + Pf1N1B4_1807 0.45 -0.1
2,076,174 + Pf1N1B4_1807 0.45 +0.6
2,076,175 - Pf1N1B4_1807 0.45 -0.1
2,076,175 - Pf1N1B4_1807 0.45 +0.6
2,076,175 - Pf1N1B4_1807 0.45 -0.4
2,076,175 - Pf1N1B4_1807 0.45 +0.6
2,076,424 + Pf1N1B4_1807 0.52 -0.4
2,076,424 + Pf1N1B4_1807 0.52 +1.8
2,076,424 + Pf1N1B4_1807 0.52 -1.4
2,076,425 - Pf1N1B4_1807 0.52 -1.6
2,076,425 - Pf1N1B4_1807 0.52 +1.6
2,076,425 - Pf1N1B4_1807 0.52 -1.0
2,076,463 - Pf1N1B4_1807 0.53 +0.2
2,076,543 + Pf1N1B4_1807 0.56 -1.0
2,076,543 + Pf1N1B4_1807 0.56 +1.3
2,076,543 + Pf1N1B4_1807 0.56 +0.2
2,076,561 + Pf1N1B4_1807 0.56 -0.8
2,076,561 + Pf1N1B4_1807 0.56 -1.0
2,076,562 - Pf1N1B4_1807 0.56 +0.8
2,076,562 - Pf1N1B4_1807 0.56 +0.5
2,076,586 - Pf1N1B4_1807 0.57 +1.0
2,076,991 + Pf1N1B4_1807 0.69 +0.1
2,076,991 + Pf1N1B4_1807 0.69 +0.6
2,076,991 + Pf1N1B4_1807 0.69 -1.0
2,076,991 + Pf1N1B4_1807 0.69 +0.2
2,076,991 + Pf1N1B4_1807 0.69 +1.1
2,076,991 + Pf1N1B4_1807 0.69 -0.7
2,076,991 + Pf1N1B4_1807 0.69 +0.9
2,076,991 + Pf1N1B4_1807 0.69 -0.1
2,076,991 + Pf1N1B4_1807 0.69 +1.0
2,076,991 + Pf1N1B4_1807 0.69 -0.1
2,076,991 + Pf1N1B4_1807 0.69 -2.2
2,076,991 + Pf1N1B4_1807 0.69 +2.2
2,076,992 - Pf1N1B4_1807 0.69 -0.2
2,076,992 - Pf1N1B4_1807 0.69 -0.5
2,076,992 - Pf1N1B4_1807 0.69 +2.5
2,076,992 - Pf1N1B4_1807 0.69 +0.6
2,076,992 - Pf1N1B4_1807 0.69 +0.1
2,076,992 - Pf1N1B4_1807 0.69 +2.9
2,076,992 - Pf1N1B4_1807 0.69 +0.2
2,076,992 - Pf1N1B4_1807 0.69 +0.9
2,076,992 - Pf1N1B4_1807 0.69 +0.3
2,076,995 + Pf1N1B4_1807 0.69 +2.9
2,076,995 + Pf1N1B4_1807 0.69 +0.3
2,076,995 + Pf1N1B4_1807 0.69 +2.2
2,076,995 + Pf1N1B4_1807 0.69 -0.7
2,076,995 + Pf1N1B4_1807 0.69 +1.8
2,076,995 + Pf1N1B4_1807 0.69 +0.7
2,076,996 - Pf1N1B4_1807 0.69 +0.0
2,076,996 - Pf1N1B4_1807 0.69 +0.6
2,076,996 - Pf1N1B4_1807 0.69 -0.2
2,076,996 - Pf1N1B4_1807 0.69 -1.0
2,076,996 - Pf1N1B4_1807 0.69 -0.4
2,076,996 - Pf1N1B4_1807 0.69 +0.2
2,076,996 - Pf1N1B4_1807 0.69 -1.0
2,076,996 - Pf1N1B4_1807 0.69 -1.0
2,076,996 - +1.6
2,077,033 + Pf1N1B4_1807 0.70 +2.0
2,077,300 - Pf1N1B4_1807 0.78 +2.2
2,077,467 + Pf1N1B4_1807 0.82 +1.0
2,077,467 + Pf1N1B4_1807 0.82 -1.0
2,077,467 + Pf1N1B4_1807 0.82 +0.1
2,077,467 + Pf1N1B4_1807 0.82 -1.0
2,077,467 + Pf1N1B4_1807 0.82 +1.4
2,077,467 + Pf1N1B4_1807 0.82 +0.6
2,077,467 + Pf1N1B4_1807 0.82 -0.4
2,077,468 - Pf1N1B4_1807 0.82 -3.0
2,077,468 - Pf1N1B4_1807 0.82 +1.3
2,077,483 - Pf1N1B4_1807 0.83 -0.4
2,077,483 - Pf1N1B4_1807 0.83 +0.6
2,077,794 + -0.4
2,077,794 + +0.4
2,077,912 - +1.3
2,077,912 - -0.2
2,078,043 + -0.7
2,078,043 + -0.4
2,078,044 - -2.0
2,078,044 - -1.7
2,078,044 - -0.5
2,078,104 + +0.0
2,078,104 + -0.6
2,078,104 + -0.2
2,078,105 - -1.0
2,078,105 - +0.0
2,078,105 - +0.1
2,078,105 - +3.4
2,078,105 - +0.2
2,078,105 - -1.0
2,078,105 - +0.0
2,078,170 - Pf1N1B4_1808 0.15 +1.4
2,078,375 + Pf1N1B4_1808 0.59 -0.4
2,078,375 + Pf1N1B4_1808 0.59 +1.3
2,078,375 + Pf1N1B4_1808 0.59 -2.6
2,078,375 + Pf1N1B4_1808 0.59 -1.7
2,078,375 + Pf1N1B4_1808 0.59 -1.4
2,078,375 + Pf1N1B4_1808 0.59 -2.2
2,078,375 + +0.6
2,078,375 + Pf1N1B4_1808 0.59 +0.6
2,078,375 + Pf1N1B4_1808 0.59 -1.1
2,078,375 + Pf1N1B4_1808 0.59 +0.7
2,078,375 + Pf1N1B4_1808 0.59 -1.0
2,078,375 + Pf1N1B4_1808 0.59 -1.0
2,078,376 - Pf1N1B4_1808 0.59 -0.2
2,078,376 - Pf1N1B4_1808 0.59 +1.2
2,078,376 - Pf1N1B4_1808 0.59 -0.7
2,078,376 - Pf1N1B4_1808 0.59 +1.0
2,078,376 - Pf1N1B4_1808 0.59 +0.5
2,078,376 - Pf1N1B4_1808 0.59 -1.4
2,078,376 - Pf1N1B4_1808 0.59 -1.0
2,078,376 - Pf1N1B4_1808 0.59 +0.8
2,078,376 - Pf1N1B4_1808 0.59 +1.3
2,078,392 - Pf1N1B4_1808 0.62 +0.1
2,078,595 + +0.7
2,078,595 + +1.6
2,078,595 + +0.7
2,078,595 + +1.6
2,078,601 + +0.6
2,078,637 + +1.0
2,078,637 + +1.0
2,078,638 - +0.6
2,078,638 - +2.2
2,078,719 + -1.0
2,078,719 + -0.4
2,078,719 + +2.2
2,078,719 + +0.4
2,078,719 + -1.7
2,078,719 + +1.2
2,078,720 - -0.4

Or see this region's nucleotide sequence