Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1274 and Pf1N1B4_1275 are separated by 325 nucleotides Pf1N1B4_1275 and Pf1N1B4_1276 are separated by 56 nucleotides Pf1N1B4_1276 and Pf1N1B4_1277 are separated by 89 nucleotides
Pf1N1B4_1274 - FIG00958579: hypothetical protein, at 1,455,891 to 1,456,088
_1274
Pf1N1B4_1275 - Flp pilus assembly protein RcpC/CpaB, at 1,456,414 to 1,456,725
_1275
Pf1N1B4_1276 - Flp pilus assembly protein RcpC/CpaB, at 1,456,782 to 1,457,342
_1276
Pf1N1B4_1277 - Flp pilus assembly protein CpaE, at 1,457,432 to 1,458,637
_1277
Position (kb)
1456
1457
1458 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1455.827 kb on + strand at 1455.828 kb on - strand at 1455.841 kb on - strand at 1455.874 kb on + strand at 1455.874 kb on + strand at 1455.874 kb on + strand at 1455.874 kb on + strand at 1455.875 kb on - strand at 1455.875 kb on - strand at 1455.887 kb on - strand at 1456.040 kb on - strand, within Pf1N1B4_1274 at 1456.077 kb on - strand at 1456.079 kb on + strand at 1456.080 kb on - strand at 1456.101 kb on - strand at 1456.101 kb on - strand at 1456.185 kb on - strand at 1456.185 kb on - strand at 1456.192 kb on + strand at 1456.192 kb on + strand at 1456.193 kb on - strand at 1456.193 kb on - strand at 1456.196 kb on - strand at 1456.198 kb on + strand at 1456.198 kb on + strand at 1456.198 kb on + strand at 1456.198 kb on + strand at 1456.198 kb on + strand at 1456.198 kb on + strand at 1456.198 kb on + strand at 1456.199 kb on - strand at 1456.199 kb on - strand at 1456.199 kb on - strand at 1456.199 kb on - strand at 1456.199 kb on - strand at 1456.202 kb on + strand at 1456.203 kb on - strand at 1456.203 kb on - strand at 1456.206 kb on + strand at 1456.206 kb on + strand at 1456.206 kb on + strand at 1456.206 kb on + strand at 1456.207 kb on - strand at 1456.207 kb on - strand at 1456.207 kb on - strand at 1456.207 kb on - strand at 1456.207 kb on - strand at 1456.229 kb on + strand at 1456.230 kb on - strand at 1456.230 kb on - strand at 1456.270 kb on + strand at 1456.270 kb on + strand at 1456.270 kb on + strand at 1456.271 kb on - strand at 1456.271 kb on - strand at 1456.274 kb on + strand at 1456.300 kb on + strand at 1456.327 kb on + strand at 1456.328 kb on - strand at 1456.328 kb on - strand at 1456.341 kb on + strand at 1456.370 kb on - strand at 1456.388 kb on + strand at 1456.458 kb on - strand, within Pf1N1B4_1275 at 1456.863 kb on + strand, within Pf1N1B4_1276 at 1456.864 kb on - strand, within Pf1N1B4_1276 at 1456.864 kb on - strand, within Pf1N1B4_1276 at 1456.864 kb on - strand, within Pf1N1B4_1276 at 1456.864 kb on - strand at 1456.864 kb on - strand, within Pf1N1B4_1276 at 1456.886 kb on - strand, within Pf1N1B4_1276 at 1456.886 kb on - strand, within Pf1N1B4_1276 at 1456.886 kb on - strand, within Pf1N1B4_1276 at 1456.886 kb on - strand, within Pf1N1B4_1276 at 1457.385 kb on + strand at 1457.763 kb on - strand, within Pf1N1B4_1277 at 1457.763 kb on - strand, within Pf1N1B4_1277 at 1457.873 kb on + strand, within Pf1N1B4_1277 at 1458.164 kb on + strand, within Pf1N1B4_1277 at 1458.164 kb on + strand, within Pf1N1B4_1277 at 1458.164 kb on + strand, within Pf1N1B4_1277 at 1458.164 kb on + strand, within Pf1N1B4_1277 at 1458.164 kb on + strand, within Pf1N1B4_1277 at 1458.164 kb on + strand, within Pf1N1B4_1277 at 1458.164 kb on + strand, within Pf1N1B4_1277 at 1458.165 kb on - strand, within Pf1N1B4_1277 at 1458.165 kb on - strand, within Pf1N1B4_1277 at 1458.165 kb on - strand, within Pf1N1B4_1277 at 1458.165 kb on - strand, within Pf1N1B4_1277 at 1458.165 kb on - strand, within Pf1N1B4_1277 at 1458.165 kb on - strand, within Pf1N1B4_1277 at 1458.165 kb on - strand, within Pf1N1B4_1277 at 1458.247 kb on + strand, within Pf1N1B4_1277 at 1458.248 kb on - strand, within Pf1N1B4_1277 at 1458.281 kb on + strand, within Pf1N1B4_1277 at 1458.281 kb on + strand, within Pf1N1B4_1277 at 1458.282 kb on - strand, within Pf1N1B4_1277
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml remove 1,455,827 + +0.4 1,455,828 - -1.6 1,455,841 - +1.1 1,455,874 + -0.2 1,455,874 + +1.0 1,455,874 + +0.7 1,455,874 + +0.4 1,455,875 - -0.2 1,455,875 - -0.5 1,455,887 - +1.4 1,456,040 - Pf1N1B4_1274 0.75 -0.6 1,456,077 - -0.5 1,456,079 + -0.6 1,456,080 - -0.1 1,456,101 - +1.6 1,456,101 - -0.7 1,456,185 - +0.4 1,456,185 - -0.6 1,456,192 + -0.6 1,456,192 + +0.2 1,456,193 - +0.4 1,456,193 - +2.6 1,456,196 - +2.2 1,456,198 + -2.2 1,456,198 + +0.4 1,456,198 + +0.4 1,456,198 + +2.7 1,456,198 + +0.7 1,456,198 + -1.9 1,456,198 + +0.4 1,456,199 - -2.2 1,456,199 - -1.2 1,456,199 - -1.2 1,456,199 - +0.9 1,456,199 - -0.6 1,456,202 + -1.9 1,456,203 - +0.2 1,456,203 - +1.2 1,456,206 + -1.6 1,456,206 + +0.9 1,456,206 + -0.1 1,456,206 + -1.2 1,456,207 - +1.8 1,456,207 - +3.0 1,456,207 - -1.2 1,456,207 - +0.4 1,456,207 - -0.5 1,456,229 + -0.2 1,456,230 - -0.1 1,456,230 - -0.6 1,456,270 + -1.2 1,456,270 + +0.0 1,456,270 + +1.0 1,456,271 - +3.6 1,456,271 - -1.2 1,456,274 + +0.4 1,456,300 + +1.4 1,456,327 + +0.7 1,456,328 - -0.6 1,456,328 - -0.6 1,456,341 + -0.0 1,456,370 - +0.4 1,456,388 + +0.4 1,456,458 - Pf1N1B4_1275 0.14 -0.1 1,456,863 + Pf1N1B4_1276 0.14 -1.9 1,456,864 - Pf1N1B4_1276 0.15 -0.6 1,456,864 - Pf1N1B4_1276 0.15 -1.2 1,456,864 - Pf1N1B4_1276 0.15 -1.6 1,456,864 - +0.4 1,456,864 - Pf1N1B4_1276 0.15 +2.4 1,456,886 - Pf1N1B4_1276 0.19 +1.4 1,456,886 - Pf1N1B4_1276 0.19 -0.3 1,456,886 - Pf1N1B4_1276 0.19 -0.6 1,456,886 - Pf1N1B4_1276 0.19 -0.9 1,457,385 + -2.2 1,457,763 - Pf1N1B4_1277 0.27 +0.7 1,457,763 - Pf1N1B4_1277 0.27 -0.6 1,457,873 + Pf1N1B4_1277 0.37 +0.4 1,458,164 + Pf1N1B4_1277 0.61 +0.7 1,458,164 + Pf1N1B4_1277 0.61 +2.0 1,458,164 + Pf1N1B4_1277 0.61 -0.6 1,458,164 + Pf1N1B4_1277 0.61 +0.0 1,458,164 + Pf1N1B4_1277 0.61 +1.2 1,458,164 + Pf1N1B4_1277 0.61 -0.6 1,458,164 + Pf1N1B4_1277 0.61 +1.0 1,458,165 - Pf1N1B4_1277 0.61 +1.4 1,458,165 - Pf1N1B4_1277 0.61 +1.0 1,458,165 - Pf1N1B4_1277 0.61 -0.2 1,458,165 - Pf1N1B4_1277 0.61 -2.2 1,458,165 - Pf1N1B4_1277 0.61 +0.7 1,458,165 - Pf1N1B4_1277 0.61 +3.6 1,458,165 - Pf1N1B4_1277 0.61 +0.4 1,458,247 + Pf1N1B4_1277 0.68 +3.2 1,458,248 - Pf1N1B4_1277 0.68 +0.2 1,458,281 + Pf1N1B4_1277 0.70 +0.4 1,458,281 + Pf1N1B4_1277 0.70 +0.4 1,458,282 - Pf1N1B4_1277 0.70 +0.4
Or see this region's nucleotide sequence