Experiment: Cephalothin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3726 and Ac3H11_3727 are separated by 86 nucleotides Ac3H11_3727 and Ac3H11_3728 are separated by 29 nucleotides Ac3H11_3728 and Ac3H11_3729 overlap by 4 nucleotides
Ac3H11_3726 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 86,363 to 87,361
_3726
Ac3H11_3727 - Creatinine amidohydrolase (EC 3.5.2.10), at 87,448 to 88,311
_3727
Ac3H11_3728 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 88,341 to 88,805
_3728
Ac3H11_3729 - Cytosine deaminase (EC 3.5.4.1), at 88,802 to 90,130
_3729
Position (kb) 87
88
89 Strain fitness (log2 ratio) -2
-1
0
1
2 at 86.463 kb on + strand, within Ac3H11_3726 at 86.463 kb on + strand, within Ac3H11_3726 at 86.464 kb on - strand, within Ac3H11_3726 at 86.563 kb on - strand, within Ac3H11_3726 at 86.637 kb on + strand, within Ac3H11_3726 at 86.637 kb on + strand, within Ac3H11_3726 at 86.637 kb on + strand, within Ac3H11_3726 at 86.637 kb on + strand, within Ac3H11_3726 at 86.637 kb on + strand, within Ac3H11_3726 at 86.637 kb on + strand, within Ac3H11_3726 at 86.901 kb on + strand, within Ac3H11_3726 at 86.902 kb on - strand, within Ac3H11_3726 at 87.203 kb on - strand, within Ac3H11_3726 at 87.217 kb on - strand, within Ac3H11_3726 at 87.243 kb on + strand, within Ac3H11_3726 at 87.258 kb on + strand, within Ac3H11_3726 at 87.258 kb on + strand, within Ac3H11_3726 at 87.258 kb on + strand, within Ac3H11_3726 at 87.259 kb on - strand, within Ac3H11_3726 at 87.259 kb on - strand, within Ac3H11_3726 at 87.259 kb on - strand, within Ac3H11_3726 at 87.259 kb on - strand, within Ac3H11_3726 at 87.367 kb on + strand at 87.367 kb on + strand at 87.367 kb on + strand at 87.367 kb on + strand at 87.716 kb on + strand, within Ac3H11_3727 at 87.717 kb on - strand, within Ac3H11_3727 at 87.981 kb on - strand, within Ac3H11_3727 at 88.076 kb on + strand, within Ac3H11_3727 at 88.076 kb on + strand, within Ac3H11_3727 at 88.077 kb on - strand, within Ac3H11_3727 at 88.077 kb on - strand, within Ac3H11_3727 at 88.298 kb on + strand at 88.298 kb on + strand at 88.298 kb on + strand at 88.299 kb on - strand at 88.299 kb on - strand at 88.357 kb on + strand at 88.357 kb on + strand at 88.357 kb on + strand at 88.501 kb on + strand, within Ac3H11_3728 at 88.501 kb on + strand, within Ac3H11_3728 at 88.502 kb on - strand, within Ac3H11_3728 at 88.502 kb on - strand, within Ac3H11_3728 at 88.576 kb on + strand, within Ac3H11_3728 at 88.576 kb on + strand, within Ac3H11_3728 at 88.576 kb on + strand, within Ac3H11_3728 at 88.577 kb on - strand, within Ac3H11_3728 at 88.577 kb on - strand, within Ac3H11_3728 at 88.577 kb on - strand, within Ac3H11_3728 at 88.577 kb on - strand, within Ac3H11_3728 at 88.727 kb on - strand, within Ac3H11_3728 at 89.169 kb on - strand, within Ac3H11_3729 at 89.169 kb on - strand, within Ac3H11_3729
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.01 mg/ml remove 86,463 + Ac3H11_3726 0.10 +0.3 86,463 + Ac3H11_3726 0.10 +0.6 86,464 - Ac3H11_3726 0.10 +1.0 86,563 - Ac3H11_3726 0.20 +0.1 86,637 + Ac3H11_3726 0.27 +1.1 86,637 + Ac3H11_3726 0.27 +1.5 86,637 + Ac3H11_3726 0.27 +1.3 86,637 + Ac3H11_3726 0.27 -0.6 86,637 + Ac3H11_3726 0.27 -0.0 86,637 + Ac3H11_3726 0.27 -0.1 86,901 + Ac3H11_3726 0.54 +1.4 86,902 - Ac3H11_3726 0.54 -0.7 87,203 - Ac3H11_3726 0.84 +1.4 87,217 - Ac3H11_3726 0.85 +2.4 87,243 + Ac3H11_3726 0.88 +1.0 87,258 + Ac3H11_3726 0.90 -0.9 87,258 + Ac3H11_3726 0.90 +1.4 87,258 + Ac3H11_3726 0.90 -0.6 87,259 - Ac3H11_3726 0.90 -1.2 87,259 - Ac3H11_3726 0.90 +1.3 87,259 - Ac3H11_3726 0.90 +0.3 87,259 - Ac3H11_3726 0.90 -0.3 87,367 + -0.4 87,367 + -2.0 87,367 + +0.4 87,367 + -1.2 87,716 + Ac3H11_3727 0.31 +1.0 87,717 - Ac3H11_3727 0.31 -0.4 87,981 - Ac3H11_3727 0.62 +0.0 88,076 + Ac3H11_3727 0.73 +0.3 88,076 + Ac3H11_3727 0.73 +0.2 88,077 - Ac3H11_3727 0.73 +0.2 88,077 - Ac3H11_3727 0.73 +0.5 88,298 + +0.4 88,298 + -0.2 88,298 + -0.6 88,299 - +0.1 88,299 - -0.1 88,357 + +0.5 88,357 + +0.2 88,357 + -0.6 88,501 + Ac3H11_3728 0.34 +2.1 88,501 + Ac3H11_3728 0.34 -0.2 88,502 - Ac3H11_3728 0.35 -0.2 88,502 - Ac3H11_3728 0.35 -0.7 88,576 + Ac3H11_3728 0.51 +1.0 88,576 + Ac3H11_3728 0.51 +1.8 88,576 + Ac3H11_3728 0.51 -0.8 88,577 - Ac3H11_3728 0.51 -1.1 88,577 - Ac3H11_3728 0.51 -0.9 88,577 - Ac3H11_3728 0.51 +1.3 88,577 - Ac3H11_3728 0.51 -0.2 88,727 - Ac3H11_3728 0.83 -1.0 89,169 - Ac3H11_3729 0.28 +0.1 89,169 - Ac3H11_3729 0.28 +0.6
Or see this region's nucleotide sequence