Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3122

Experiment: Cephalothin 0.01 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_3119 and Ac3H11_3120 are separated by 21 nucleotidesAc3H11_3120 and Ac3H11_3121 overlap by 14 nucleotidesAc3H11_3121 and Ac3H11_3122 are separated by 140 nucleotidesAc3H11_3122 and Ac3H11_3123 are separated by 161 nucleotides Ac3H11_3119 - OmpA/MotB, at 21,471 to 22,493 _3119 Ac3H11_3120 - hypothetical protein, at 22,515 to 22,745 _3120 Ac3H11_3121 - hypothetical protein, at 22,732 to 22,875 _3121 Ac3H11_3122 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 23,016 to 25,301 _3122 Ac3H11_3123 - 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF), at 25,463 to 26,443 _3123 Position (kb) 23 24 25 26Strain fitness (log2 ratio) -2 -1 0 1 2 3at 22.021 kb on + strand, within Ac3H11_3119at 22.021 kb on + strand, within Ac3H11_3119at 22.021 kb on + strand, within Ac3H11_3119at 22.021 kb on + strand, within Ac3H11_3119at 22.021 kb on + strand, within Ac3H11_3119at 22.022 kb on - strand, within Ac3H11_3119at 22.022 kb on - strand, within Ac3H11_3119at 22.030 kb on + strand, within Ac3H11_3119at 22.031 kb on - strand, within Ac3H11_3119at 22.096 kb on + strand, within Ac3H11_3119at 22.096 kb on + strand, within Ac3H11_3119at 22.096 kb on + strand, within Ac3H11_3119at 22.097 kb on - strand, within Ac3H11_3119at 22.097 kb on - strand, within Ac3H11_3119at 22.097 kb on - strand, within Ac3H11_3119at 22.097 kb on - strand, within Ac3H11_3119at 22.130 kb on - strand, within Ac3H11_3119at 22.169 kb on - strand, within Ac3H11_3119at 22.214 kb on - strand, within Ac3H11_3119at 22.261 kb on + strand, within Ac3H11_3119at 22.261 kb on + strand, within Ac3H11_3119at 22.261 kb on + strand, within Ac3H11_3119at 22.261 kb on + strand, within Ac3H11_3119at 22.261 kb on + strand, within Ac3H11_3119at 22.261 kb on + strand, within Ac3H11_3119at 22.262 kb on - strand, within Ac3H11_3119at 22.262 kb on - strand, within Ac3H11_3119at 22.262 kb on - strand, within Ac3H11_3119at 22.343 kb on - strand, within Ac3H11_3119at 22.541 kb on + strand, within Ac3H11_3120at 22.541 kb on + strand, within Ac3H11_3120at 22.541 kb on + strand, within Ac3H11_3120at 22.542 kb on - strand, within Ac3H11_3120at 22.687 kb on + strand, within Ac3H11_3120at 22.688 kb on - strand, within Ac3H11_3120at 22.873 kb on + strandat 22.873 kb on + strandat 22.873 kb on + strandat 22.874 kb on - strandat 23.086 kb on + strandat 23.087 kb on - strandat 23.087 kb on - strandat 23.095 kb on + strandat 23.293 kb on + strand, within Ac3H11_3122at 23.308 kb on + strand, within Ac3H11_3122at 23.308 kb on + strand, within Ac3H11_3122at 23.308 kb on + strand, within Ac3H11_3122at 23.309 kb on - strand, within Ac3H11_3122at 23.309 kb on - strand, within Ac3H11_3122at 23.309 kb on - strand, within Ac3H11_3122at 23.309 kb on - strand, within Ac3H11_3122at 23.625 kb on - strand, within Ac3H11_3122at 23.625 kb on - strand, within Ac3H11_3122at 23.709 kb on + strand, within Ac3H11_3122at 23.709 kb on + strand, within Ac3H11_3122at 23.710 kb on - strand, within Ac3H11_3122at 23.710 kb on - strand, within Ac3H11_3122at 23.710 kb on - strand, within Ac3H11_3122at 23.710 kb on - strand, within Ac3H11_3122at 23.921 kb on - strand, within Ac3H11_3122at 24.394 kb on + strand, within Ac3H11_3122at 24.394 kb on + strand, within Ac3H11_3122at 24.394 kb on + strand, within Ac3H11_3122at 24.395 kb on - strand, within Ac3H11_3122at 24.473 kb on - strand, within Ac3H11_3122at 24.473 kb on - strand, within Ac3H11_3122at 24.563 kb on - strand, within Ac3H11_3122at 24.635 kb on - strand, within Ac3H11_3122at 24.635 kb on - strand, within Ac3H11_3122at 24.772 kb on + strand, within Ac3H11_3122at 24.772 kb on + strand, within Ac3H11_3122at 24.773 kb on - strand, within Ac3H11_3122at 24.773 kb on - strand, within Ac3H11_3122at 24.773 kb on - strand, within Ac3H11_3122at 24.773 kb on - strand, within Ac3H11_3122at 24.773 kb on - strand, within Ac3H11_3122at 24.773 kb on - strand, within Ac3H11_3122at 24.829 kb on + strand, within Ac3H11_3122at 24.829 kb on + strand, within Ac3H11_3122at 24.829 kb on + strand, within Ac3H11_3122at 24.829 kb on + strand, within Ac3H11_3122at 24.829 kb on + strand, within Ac3H11_3122at 24.829 kb on + strand, within Ac3H11_3122at 24.829 kb on + strand, within Ac3H11_3122at 24.830 kb on - strand, within Ac3H11_3122at 24.830 kb on - strand, within Ac3H11_3122at 24.988 kb on + strand, within Ac3H11_3122at 24.988 kb on + strand, within Ac3H11_3122at 24.989 kb on - strand, within Ac3H11_3122at 25.336 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.01 mg/ml
remove
22,021 + Ac3H11_3119 0.54 -0.9
22,021 + Ac3H11_3119 0.54 -0.9
22,021 + Ac3H11_3119 0.54 -0.0
22,021 + Ac3H11_3119 0.54 -0.3
22,021 + Ac3H11_3119 0.54 +1.7
22,022 - Ac3H11_3119 0.54 -0.4
22,022 - Ac3H11_3119 0.54 -0.6
22,030 + Ac3H11_3119 0.55 -0.4
22,031 - Ac3H11_3119 0.55 -0.0
22,096 + Ac3H11_3119 0.61 -0.8
22,096 + Ac3H11_3119 0.61 -0.3
22,096 + Ac3H11_3119 0.61 +0.3
22,097 - Ac3H11_3119 0.61 -0.1
22,097 - Ac3H11_3119 0.61 -0.7
22,097 - Ac3H11_3119 0.61 -0.2
22,097 - Ac3H11_3119 0.61 +0.6
22,130 - Ac3H11_3119 0.64 +0.2
22,169 - Ac3H11_3119 0.68 -1.0
22,214 - Ac3H11_3119 0.73 +0.5
22,261 + Ac3H11_3119 0.77 -0.3
22,261 + Ac3H11_3119 0.77 -0.0
22,261 + Ac3H11_3119 0.77 +1.7
22,261 + Ac3H11_3119 0.77 -0.3
22,261 + Ac3H11_3119 0.77 -0.4
22,261 + Ac3H11_3119 0.77 -0.3
22,262 - Ac3H11_3119 0.77 -0.1
22,262 - Ac3H11_3119 0.77 +0.6
22,262 - Ac3H11_3119 0.77 -1.1
22,343 - Ac3H11_3119 0.85 +0.2
22,541 + Ac3H11_3120 0.11 +0.3
22,541 + Ac3H11_3120 0.11 -0.3
22,541 + Ac3H11_3120 0.11 +0.5
22,542 - Ac3H11_3120 0.12 +1.1
22,687 + Ac3H11_3120 0.74 -0.0
22,688 - Ac3H11_3120 0.75 +0.9
22,873 + -0.6
22,873 + -2.0
22,873 + -0.6
22,874 - -2.0
23,086 + +1.0
23,087 - +0.1
23,087 - +0.4
23,095 + -0.4
23,293 + Ac3H11_3122 0.12 -0.8
23,308 + Ac3H11_3122 0.13 -0.7
23,308 + Ac3H11_3122 0.13 +0.1
23,308 + Ac3H11_3122 0.13 -0.5
23,309 - Ac3H11_3122 0.13 +0.4
23,309 - Ac3H11_3122 0.13 -0.9
23,309 - Ac3H11_3122 0.13 +0.1
23,309 - Ac3H11_3122 0.13 -0.5
23,625 - Ac3H11_3122 0.27 -0.5
23,625 - Ac3H11_3122 0.27 -0.3
23,709 + Ac3H11_3122 0.30 +0.2
23,709 + Ac3H11_3122 0.30 +0.2
23,710 - Ac3H11_3122 0.30 +0.3
23,710 - Ac3H11_3122 0.30 +0.5
23,710 - Ac3H11_3122 0.30 -0.0
23,710 - Ac3H11_3122 0.30 +0.3
23,921 - Ac3H11_3122 0.40 -1.1
24,394 + Ac3H11_3122 0.60 -0.5
24,394 + Ac3H11_3122 0.60 +1.2
24,394 + Ac3H11_3122 0.60 -0.3
24,395 - Ac3H11_3122 0.60 -0.2
24,473 - Ac3H11_3122 0.64 -1.0
24,473 - Ac3H11_3122 0.64 +1.0
24,563 - Ac3H11_3122 0.68 -0.1
24,635 - Ac3H11_3122 0.71 +0.6
24,635 - Ac3H11_3122 0.71 +1.0
24,772 + Ac3H11_3122 0.77 +0.1
24,772 + Ac3H11_3122 0.77 -0.3
24,773 - Ac3H11_3122 0.77 -0.5
24,773 - Ac3H11_3122 0.77 +1.0
24,773 - Ac3H11_3122 0.77 -0.4
24,773 - Ac3H11_3122 0.77 -0.1
24,773 - Ac3H11_3122 0.77 +0.1
24,773 - Ac3H11_3122 0.77 +0.2
24,829 + Ac3H11_3122 0.79 +0.6
24,829 + Ac3H11_3122 0.79 -1.4
24,829 + Ac3H11_3122 0.79 +2.8
24,829 + Ac3H11_3122 0.79 +0.1
24,829 + Ac3H11_3122 0.79 +0.8
24,829 + Ac3H11_3122 0.79 -0.6
24,829 + Ac3H11_3122 0.79 -0.2
24,830 - Ac3H11_3122 0.79 +0.9
24,830 - Ac3H11_3122 0.79 -0.4
24,988 + Ac3H11_3122 0.86 +1.3
24,988 + Ac3H11_3122 0.86 -0.5
24,989 - Ac3H11_3122 0.86 -0.4
25,336 - -0.5

Or see this region's nucleotide sequence