Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2223

Experiment: Cephalothin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2222 and Ac3H11_2223 are separated by 15 nucleotidesAc3H11_2223 and Ac3H11_2224 are separated by 7 nucleotidesAc3H11_2224 and Ac3H11_2225 are separated by 102 nucleotides Ac3H11_2222 - RND multidrug efflux transporter; Acriflavin resistance protein, at 456,097 to 459,282 _2222 Ac3H11_2223 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 459,298 to 460,476 _2223 Ac3H11_2224 - Transcriptional regulator, TetR family, at 460,484 to 461,182 _2224 Ac3H11_2225 - Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11), at 461,285 to 461,821 _2225 Position (kb) 459 460 461Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 458.454 kb on - strand, within Ac3H11_2222at 458.454 kb on - strand, within Ac3H11_2222at 458.714 kb on + strand, within Ac3H11_2222at 458.714 kb on + strand, within Ac3H11_2222at 458.714 kb on + strand, within Ac3H11_2222at 458.714 kb on + strand, within Ac3H11_2222at 458.714 kb on + strand, within Ac3H11_2222at 458.714 kb on + strand, within Ac3H11_2222at 458.714 kb on + strand, within Ac3H11_2222at 458.715 kb on - strand, within Ac3H11_2222at 458.715 kb on - strand, within Ac3H11_2222at 458.761 kb on + strand, within Ac3H11_2222at 458.762 kb on - strand, within Ac3H11_2222at 458.762 kb on - strand, within Ac3H11_2222at 459.029 kb on + strandat 459.029 kb on + strandat 459.029 kb on + strandat 459.029 kb on + strandat 459.029 kb on + strandat 459.029 kb on + strandat 459.029 kb on + strandat 459.030 kb on - strandat 459.030 kb on - strandat 459.030 kb on - strandat 459.030 kb on - strandat 459.030 kb on - strandat 459.131 kb on + strandat 459.132 kb on - strandat 459.198 kb on - strandat 459.357 kb on + strandat 459.488 kb on + strand, within Ac3H11_2223at 459.488 kb on + strand, within Ac3H11_2223at 459.489 kb on - strand, within Ac3H11_2223at 459.521 kb on + strand, within Ac3H11_2223at 459.656 kb on + strand, within Ac3H11_2223at 459.656 kb on + strand, within Ac3H11_2223at 459.656 kb on + strand, within Ac3H11_2223at 459.657 kb on - strand, within Ac3H11_2223at 459.851 kb on - strand, within Ac3H11_2223at 459.851 kb on - strand, within Ac3H11_2223at 459.972 kb on - strand, within Ac3H11_2223at 460.029 kb on + strand, within Ac3H11_2223at 460.029 kb on + strand, within Ac3H11_2223at 460.029 kb on + strand, within Ac3H11_2223at 460.029 kb on + strand, within Ac3H11_2223at 460.029 kb on + strand, within Ac3H11_2223at 460.029 kb on + strand, within Ac3H11_2223at 460.029 kb on + strand, within Ac3H11_2223at 460.029 kb on + strand, within Ac3H11_2223at 460.030 kb on - strand, within Ac3H11_2223at 460.030 kb on - strand, within Ac3H11_2223at 460.064 kb on + strand, within Ac3H11_2223at 460.064 kb on + strand, within Ac3H11_2223at 460.065 kb on - strand, within Ac3H11_2223at 460.065 kb on - strand, within Ac3H11_2223at 460.363 kb on - strandat 460.575 kb on + strand, within Ac3H11_2224at 460.575 kb on + strand, within Ac3H11_2224at 460.575 kb on + strand, within Ac3H11_2224at 460.575 kb on + strand, within Ac3H11_2224at 460.575 kb on + strand, within Ac3H11_2224at 460.576 kb on - strand, within Ac3H11_2224at 460.576 kb on - strand, within Ac3H11_2224at 460.576 kb on - strand, within Ac3H11_2224at 460.576 kb on - strand, within Ac3H11_2224at 460.576 kb on - strand, within Ac3H11_2224at 460.576 kb on - strand, within Ac3H11_2224at 460.668 kb on + strand, within Ac3H11_2224at 460.668 kb on + strand, within Ac3H11_2224at 460.668 kb on + strand, within Ac3H11_2224at 460.668 kb on + strand, within Ac3H11_2224at 460.668 kb on + strand, within Ac3H11_2224at 460.668 kb on + strand, within Ac3H11_2224at 460.668 kb on + strand, within Ac3H11_2224at 460.669 kb on - strand, within Ac3H11_2224at 460.669 kb on - strand, within Ac3H11_2224at 460.669 kb on - strand, within Ac3H11_2224at 460.677 kb on + strand, within Ac3H11_2224at 460.677 kb on + strand, within Ac3H11_2224at 460.678 kb on - strand, within Ac3H11_2224at 460.774 kb on - strand, within Ac3H11_2224at 460.774 kb on - strand, within Ac3H11_2224at 460.774 kb on - strand, within Ac3H11_2224at 460.774 kb on - strand, within Ac3H11_2224at 460.774 kb on - strand, within Ac3H11_2224at 460.872 kb on + strand, within Ac3H11_2224at 460.872 kb on + strand, within Ac3H11_2224at 460.872 kb on + strand, within Ac3H11_2224at 460.873 kb on - strand, within Ac3H11_2224at 460.873 kb on - strand, within Ac3H11_2224at 460.873 kb on - strand, within Ac3H11_2224at 460.873 kb on - strand, within Ac3H11_2224at 461.210 kb on - strandat 461.212 kb on + strandat 461.217 kb on + strandat 461.246 kb on + strandat 461.247 kb on - strandat 461.247 kb on - strandat 461.381 kb on + strand, within Ac3H11_2225at 461.411 kb on + strand, within Ac3H11_2225at 461.411 kb on + strand, within Ac3H11_2225at 461.411 kb on + strand, within Ac3H11_2225at 461.412 kb on - strand, within Ac3H11_2225at 461.412 kb on - strand, within Ac3H11_2225at 461.412 kb on - strand, within Ac3H11_2225

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.01 mg/ml
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458,454 - Ac3H11_2222 0.74 +0.1
458,454 - Ac3H11_2222 0.74 +0.8
458,714 + Ac3H11_2222 0.82 -0.7
458,714 + Ac3H11_2222 0.82 -1.5
458,714 + Ac3H11_2222 0.82 +0.8
458,714 + Ac3H11_2222 0.82 +0.2
458,714 + Ac3H11_2222 0.82 -0.3
458,714 + Ac3H11_2222 0.82 -0.2
458,714 + Ac3H11_2222 0.82 +0.1
458,715 - Ac3H11_2222 0.82 +0.6
458,715 - Ac3H11_2222 0.82 -1.3
458,761 + Ac3H11_2222 0.84 -0.2
458,762 - Ac3H11_2222 0.84 +1.7
458,762 - Ac3H11_2222 0.84 -1.3
459,029 + +0.6
459,029 + -0.5
459,029 + +1.2
459,029 + +0.5
459,029 + -0.2
459,029 + +0.9
459,029 + +0.5
459,030 - -0.2
459,030 - +0.6
459,030 - -0.3
459,030 - +0.4
459,030 - +0.8
459,131 + +0.5
459,132 - +0.5
459,198 - -0.3
459,357 + +0.2
459,488 + Ac3H11_2223 0.16 +0.3
459,488 + Ac3H11_2223 0.16 +1.6
459,489 - Ac3H11_2223 0.16 +1.4
459,521 + Ac3H11_2223 0.19 +0.1
459,656 + Ac3H11_2223 0.30 +0.7
459,656 + Ac3H11_2223 0.30 +0.6
459,656 + Ac3H11_2223 0.30 -1.5
459,657 - Ac3H11_2223 0.30 -0.3
459,851 - Ac3H11_2223 0.47 +2.3
459,851 - Ac3H11_2223 0.47 +0.1
459,972 - Ac3H11_2223 0.57 -0.1
460,029 + Ac3H11_2223 0.62 +0.1
460,029 + Ac3H11_2223 0.62 +0.5
460,029 + Ac3H11_2223 0.62 +0.5
460,029 + Ac3H11_2223 0.62 -1.4
460,029 + Ac3H11_2223 0.62 -0.2
460,029 + Ac3H11_2223 0.62 +0.7
460,029 + Ac3H11_2223 0.62 -0.9
460,029 + Ac3H11_2223 0.62 +0.2
460,030 - Ac3H11_2223 0.62 -1.5
460,030 - Ac3H11_2223 0.62 +0.5
460,064 + Ac3H11_2223 0.65 +0.1
460,064 + Ac3H11_2223 0.65 +0.0
460,065 - Ac3H11_2223 0.65 +0.1
460,065 - Ac3H11_2223 0.65 +1.0
460,363 - +0.3
460,575 + Ac3H11_2224 0.13 +2.4
460,575 + Ac3H11_2224 0.13 +0.4
460,575 + Ac3H11_2224 0.13 +0.7
460,575 + Ac3H11_2224 0.13 -0.0
460,575 + Ac3H11_2224 0.13 -0.0
460,576 - Ac3H11_2224 0.13 -1.1
460,576 - Ac3H11_2224 0.13 +0.9
460,576 - Ac3H11_2224 0.13 -1.2
460,576 - Ac3H11_2224 0.13 +0.3
460,576 - Ac3H11_2224 0.13 -1.8
460,576 - Ac3H11_2224 0.13 +0.5
460,668 + Ac3H11_2224 0.26 +0.1
460,668 + Ac3H11_2224 0.26 +0.0
460,668 + Ac3H11_2224 0.26 +0.5
460,668 + Ac3H11_2224 0.26 +2.4
460,668 + Ac3H11_2224 0.26 +0.3
460,668 + Ac3H11_2224 0.26 +1.1
460,668 + Ac3H11_2224 0.26 +2.4
460,669 - Ac3H11_2224 0.26 -0.1
460,669 - Ac3H11_2224 0.26 +0.4
460,669 - Ac3H11_2224 0.26 +1.5
460,677 + Ac3H11_2224 0.28 +0.7
460,677 + Ac3H11_2224 0.28 -0.5
460,678 - Ac3H11_2224 0.28 +0.8
460,774 - Ac3H11_2224 0.41 +0.9
460,774 - Ac3H11_2224 0.41 -0.2
460,774 - Ac3H11_2224 0.41 -0.4
460,774 - Ac3H11_2224 0.41 +0.4
460,774 - Ac3H11_2224 0.41 -0.1
460,872 + Ac3H11_2224 0.56 -0.3
460,872 + Ac3H11_2224 0.56 -0.1
460,872 + Ac3H11_2224 0.56 -0.2
460,873 - Ac3H11_2224 0.56 +0.7
460,873 - Ac3H11_2224 0.56 +0.5
460,873 - Ac3H11_2224 0.56 +0.5
460,873 - Ac3H11_2224 0.56 -1.1
461,210 - -0.9
461,212 + -0.1
461,217 + -0.3
461,246 + -0.5
461,247 - +0.2
461,247 - -1.1
461,381 + Ac3H11_2225 0.18 +0.5
461,411 + Ac3H11_2225 0.23 -2.8
461,411 + Ac3H11_2225 0.23 +1.2
461,411 + Ac3H11_2225 0.23 -0.1
461,412 - Ac3H11_2225 0.24 -0.3
461,412 - Ac3H11_2225 0.24 -1.6
461,412 - Ac3H11_2225 0.24 -0.7

Or see this region's nucleotide sequence