Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003022

Experiment: R2A outgrowth control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A outgrowth control
3,417,762	+		ABIE53_003020	0.83	+0.3
3,417,762	+		ABIE53_003020	0.83	+1.3
3,417,762	+		ABIE53_003020	0.83	-0.7
3,417,762	+		ABIE53_003020	0.83	-0.0
3,417,762	+		ABIE53_003020	0.83	+0.8
3,417,762	+		ABIE53_003020	0.83	-0.3
3,417,762	+		ABIE53_003020	0.83	+1.4
3,417,762	+		ABIE53_003020	0.83	-0.2
3,417,762	+		ABIE53_003020	0.83	+0.8
3,417,762	+		ABIE53_003020	0.83	-0.1
3,417,762	+		ABIE53_003020	0.83	+1.4
3,417,762	+		ABIE53_003020	0.83	-1.2
3,417,762	+		ABIE53_003020	0.83	-0.1
3,417,762	+		ABIE53_003020	0.83	-0.5
3,417,762	+		ABIE53_003020	0.83	+1.1
3,417,763	-		ABIE53_003020	0.83	+0.1
3,417,763	-		ABIE53_003020	0.83	-2.3
3,417,763	-		ABIE53_003020	0.83	-1.5
3,417,763	-		ABIE53_003020	0.83	+1.1
3,417,763	-		ABIE53_003020	0.83	-1.5
3,417,763	-		ABIE53_003020	0.83	-2.2
3,417,763	-		ABIE53_003020	0.83	-1.2
3,417,763	-		ABIE53_003020	0.83	-0.7
3,417,763	-		ABIE53_003020	0.83	+0.5
3,417,847	+				-0.4
3,417,847	+				-0.5
3,417,848	-				-0.3
3,417,928	+				-0.2
3,417,928	+				-0.7
3,417,928	+				-0.7
3,417,928	+				-1.1
3,417,928	+				-0.5
3,417,929	-				-0.2
3,417,929	-				-1.2
3,417,929	-				-1.5
3,417,929	-				+0.7
3,417,929	-				-0.7
3,417,929	-				-0.3
3,417,929	-				+0.1
3,417,929	-				-0.1
3,418,009	+				+0.8
3,418,009	+				+0.5
3,418,009	+				-0.2
3,418,009	+				-1.3
3,418,009	+				+0.5
3,418,009	+				-0.4
3,418,009	+				-1.0
3,418,009	+				+0.1
3,418,009	+				-1.7
3,418,009	+				+0.2
3,418,009	+				-1.1
3,418,009	+				+0.1
3,418,009	+				-0.6
3,418,010	-				+0.6
3,418,010	-				-0.2
3,418,010	-				+1.1
3,418,010	-				+0.6
3,418,010	-				+0.1
3,418,010	-				+0.1
3,418,010	-				-0.8
3,418,010	-				+3.4
3,418,010	-				-0.5
3,418,010	-				-0.4
3,418,013	+				-0.7
3,418,013	+				-1.3
3,418,013	+				+2.1
3,418,014	-				+2.7
3,418,014	-				-1.7
3,418,014	-				+0.1
3,418,014	-				-0.2
3,418,014	-				-0.9
3,418,014	-				-0.5
3,418,014	-				+0.3
3,418,138	-		ABIE53_003021	0.15	-0.7
3,418,138	-		ABIE53_003021	0.15	+0.5
3,418,138	-		ABIE53_003021	0.15	+1.0
3,418,201	+		ABIE53_003021	0.27	-1.2
3,418,201	+		ABIE53_003021	0.27	+0.1
3,418,202	-		ABIE53_003021	0.27	-0.5
3,418,323	+		ABIE53_003021	0.50	-0.0
3,418,437	+		ABIE53_003021	0.72	-0.2
3,418,437	+		ABIE53_003021	0.72	+1.8
3,418,437	+		ABIE53_003021	0.72	-1.1
3,418,438	-		ABIE53_003021	0.72	-0.8
3,418,438	-		ABIE53_003021	0.72	+0.1
3,418,491	+		ABIE53_003021	0.82	+2.2
3,418,491	+		ABIE53_003021	0.82	+1.5
3,418,492	-		ABIE53_003021	0.83	+1.1
3,418,492	-		ABIE53_003021	0.83	+0.1
3,418,492	-		ABIE53_003021	0.83	-0.5
3,418,492	-		ABIE53_003021	0.83	-0.2
3,418,492	-		ABIE53_003021	0.83	-1.2
3,418,594	+				-0.2
3,418,594	+				+0.1
3,418,595	-				+0.5
3,418,595	-				-1.7
3,418,595	-				+0.1
3,418,641	+				-1.3
3,418,642	-				+0.1
3,418,642	-				-0.3
3,418,661	+				-0.7
3,418,662	-				-0.7
3,418,662	-				-0.7
3,418,662	-				+0.5
3,418,716	+				-0.3
3,418,716	+				+0.1
3,418,716	+				+0.0
3,418,716	+				+0.0
3,418,717	-				-0.1
3,418,717	-				-0.2
3,418,717	-				-0.9
3,418,717	-				+0.5
3,418,717	-				+0.1
3,418,765	+				+0.3
3,418,765	+				+1.7
3,418,765	+				-0.5
3,418,765	+				-0.1
3,418,765	+				-0.9
3,418,765	+				-0.5
3,418,765	+				-1.0
3,418,766	-				-0.1
3,418,766	-				-0.5
3,418,766	-				+1.1
3,418,766	-				-0.3
3,418,766	-				-0.9
3,418,766	-				-1.7
3,418,766	-				-1.9
3,418,766	-				-1.2
3,418,825	+		ABIE53_003022	0.11	-0.2
3,418,826	-		ABIE53_003022	0.11	-2.7
3,418,826	-		ABIE53_003022	0.11	+0.2
3,418,859	-		ABIE53_003022	0.14	-0.2
3,419,016	+		ABIE53_003022	0.30	+2.1
3,419,016	+		ABIE53_003022	0.30	+0.1
3,419,016	+		ABIE53_003022	0.30	+0.4
3,419,016	+		ABIE53_003022	0.30	+0.8
3,419,016	+		ABIE53_003022	0.30	+0.2
3,419,016	+		ABIE53_003022	0.30	+2.7
3,419,016	+		ABIE53_003022	0.30	-0.4
3,419,017	-		ABIE53_003022	0.30	-0.5
3,419,017	-		ABIE53_003022	0.30	-0.2
3,419,017	-		ABIE53_003022	0.30	-0.0
3,419,180	+		ABIE53_003022	0.47	+1.9
3,419,181	-		ABIE53_003022	0.47	+0.7
3,419,313	+		ABIE53_003022	0.61	-1.3
3,419,313	+		ABIE53_003022	0.61	-0.3
3,419,313	+		ABIE53_003022	0.61	+1.5
3,419,313	+		ABIE53_003022	0.61	-0.4
3,419,313	+		ABIE53_003022	0.61	-0.0
3,419,313	+		ABIE53_003022	0.61	+0.4
3,419,314	-		ABIE53_003022	0.61	+1.1
3,419,314	-		ABIE53_003022	0.61	+3.1
3,419,314	-		ABIE53_003022	0.61	+0.3
3,419,314	-		ABIE53_003022	0.61	-1.2
3,419,314	-		ABIE53_003022	0.61	-0.1
3,419,314	-		ABIE53_003022	0.61	-0.6
3,419,314	-		ABIE53_003022	0.61	-0.7
3,419,314	-		ABIE53_003022	0.61	+0.8
3,419,314	-		ABIE53_003022	0.61	+0.1
3,419,314	-		ABIE53_003022	0.61	+1.1
3,419,362	+		ABIE53_003022	0.66	-0.1
3,419,362	+		ABIE53_003022	0.66	-0.8
3,419,362	+		ABIE53_003022	0.66	+0.3
3,419,362	+		ABIE53_003022	0.66	-0.9
3,419,362	+		ABIE53_003022	0.66	-1.5
3,419,362	+		ABIE53_003022	0.66	-1.2
3,419,362	+		ABIE53_003022	0.66	-1.2
3,419,362	+		ABIE53_003022	0.66	-2.2
3,419,363	-		ABIE53_003022	0.66	+0.9
3,419,363	-		ABIE53_003022	0.66	+1.6
3,419,363	-		ABIE53_003022	0.66	+0.5
3,419,372	+		ABIE53_003022	0.67	+0.5
3,419,513	+		ABIE53_003022	0.81	+0.3
3,419,513	+		ABIE53_003022	0.81	+0.4
3,419,514	-		ABIE53_003022	0.81	-0.9
3,419,636	+				+1.1
3,419,636	+				+0.6
3,419,636	+				-0.9
3,419,636	+				+0.1
3,419,636	+				-1.2
3,419,636	+				+0.8
3,419,636	+				+0.1
3,419,636	+				-0.5
3,419,636	+				-0.5
3,419,636	+				-0.9
3,419,637	-				-1.3
3,419,693	+				+1.1
3,419,693	+				-0.6
3,419,693	+				+0.4
3,419,693	+				+0.1
3,419,693	+				+1.4
3,419,693	+				+0.7
3,419,693	+				-0.2
3,419,693	+				-0.8
3,419,693	+				+0.9
3,419,693	+				-0.6
3,419,693	+				-0.5
3,419,693	+				+0.1
3,419,693	+				-2.4
3,419,693	+				+0.0
3,419,693	+				+1.3
3,419,693	+				-0.1
3,419,693	+				-0.9
3,419,693	+				-1.7
3,419,693	+				-1.2
3,419,693	+				+0.0
3,419,693	+				+1.1
3,419,693	+				+0.7
3,419,693	+				+0.5
3,419,693	+				+0.1
3,419,693	+				+0.3
3,419,693	+				+1.4
3,419,693	+				+1.3
3,419,693	+				+0.9
3,419,693	+				+2.4
3,419,693	+				-0.2
3,419,693	+				-0.1
3,419,693	+				-0.2
3,419,694	-				+0.8
3,419,694	-				-0.5
3,419,694	-				+0.0
3,419,694	-				-1.2
3,419,694	-				-0.5
3,419,694	-				-0.2
3,419,694	-				+0.4
3,419,694	-				-0.1
3,419,694	-				-0.3
3,419,694	-				-0.5
3,419,694	-				-0.2
3,419,694	-				-0.2
3,419,694	-				+0.8
3,419,694	-				-1.2
3,419,694	-				+0.5
3,419,694	-				-0.5
3,419,694	-				+0.1
3,419,694	-				-0.1
3,419,694	-				+0.7
3,419,694	-				+1.4
3,419,694	-				+0.1
3,419,694	-				-0.8
3,419,694	-				-3.4
3,419,694	-				-0.8
3,419,694	-				-0.2
3,419,694	-				-0.1
3,419,694	-				-2.7
3,419,694	-				-0.0
3,419,694	-				-0.2
3,419,694	-				+0.8
3,419,694	-				-0.3
3,419,694	-				+1.6
3,419,694	-				-0.2
3,419,694	-				-0.5
3,419,694	-				-0.0
3,419,694	-				+0.0
3,419,694	-				-1.7
3,419,694	-				-0.9
3,419,694	-				+0.8
3,419,694	-				+0.0
3,419,694	-				+0.8
3,419,694	-				-0.7
3,419,694	-				+0.3
3,419,874	+				-0.1
3,419,874	+				-0.5
3,419,875	-				-0.3
3,419,875	-				-0.5
3,419,887	+				+1.1
3,419,887	+				+0.4
3,419,888	-				-0.2
3,419,901	+				-1.2
3,419,901	+				+1.1
3,419,901	+				+0.0
3,419,901	+				-1.3
3,419,901	+				+0.1
3,419,902	-				+0.1
3,419,902	-				-1.1
3,419,902	-				-0.1
3,419,902	-				+0.8
3,419,902	-				-2.3
3,419,903	+				+0.5
3,419,903	+				+0.1
3,419,903	+				+0.2
3,419,903	+				-1.7
3,419,903	+				-0.7
3,419,903	+				+0.1
3,419,903	+				-1.5
3,419,903	+				-0.9
3,419,903	+				+0.1
3,419,903	+				-0.4
3,419,903	+				-1.5
3,419,903	+				+0.0
3,419,904	-				+0.9
3,419,904	-				-0.4
3,419,904	-				+1.1
3,419,904	-				-0.4
3,419,904	-				-0.8
3,419,904	-				-0.5
3,419,904	-				+0.1
3,419,904	-				+0.5
3,419,904	-				+0.3
3,419,904	-				+0.4
3,419,904	-				-1.7
3,419,904	-				-0.5
3,419,904	-				-1.3
3,419,904	-				+0.1
3,419,904	-				+2.4
3,419,904	-				-0.5
3,419,904	-				-1.0
3,419,904	-				-1.7
3,419,904	-				-0.6
3,419,904	-				+2.1
3,419,904	-				+1.1
3,419,904	-				-0.1
3,419,904	-				-0.5
3,419,952	+				-0.3
3,419,952	+				-1.2
3,419,952	+				-0.5
3,419,952	+				-1.9
3,419,952	+				-1.9
3,419,952	+				+1.8
3,419,952	+				+0.9
3,419,952	+				+0.4
3,419,952	+				+0.5
3,419,952	+				+0.6
3,419,952	+				-1.1
3,419,952	+				-0.1
3,419,953	-				+0.3
3,419,953	-				-0.0
3,419,953	-				+0.3
3,419,953	-				-1.2
3,419,953	-				+0.0
3,419,953	-				+0.4
3,419,953	-				-0.0
3,419,953	-				-1.5
3,419,953	-				+0.4
3,419,953	-				+0.6
3,419,953	-				-1.1
3,419,953	-				-0.8
3,419,953	-				+0.9
3,419,953	-				-0.4
3,420,259	+		ABIE53_003023	0.49	-0.9
3,420,259	+		ABIE53_003023	0.49	+0.3
3,420,544	+		ABIE53_003023	0.87	-2.1
3,420,544	+		ABIE53_003023	0.87	-0.8
3,420,544	+		ABIE53_003023	0.87	-1.6
3,420,544	+		ABIE53_003023	0.87	-0.9
3,420,544	+		ABIE53_003023	0.87	-0.2
3,420,544	+		ABIE53_003023	0.87	-0.8
3,420,544	+		ABIE53_003023	0.87	-2.1
3,420,544	+		ABIE53_003023	0.87	-0.1
3,420,545	-		ABIE53_003023	0.87	-0.5
3,420,545	-		ABIE53_003023	0.87	+1.1
3,420,545	-		ABIE53_003023	0.87	-0.9
3,420,545	-		ABIE53_003023	0.87	+0.5
3,420,545	-		ABIE53_003023	0.87	-0.3
3,420,545	-		ABIE53_003023	0.87	+1.4
3,420,545	-		ABIE53_003023	0.87	+1.5
3,420,545	-		ABIE53_003023	0.87	-0.6
3,420,545	-		ABIE53_003023	0.87	+1.1
3,420,545	-		ABIE53_003023	0.87	-1.5
3,420,636	+				-0.2
3,420,636	+				-0.5
3,420,636	+				-0.9
3,420,636	+				-1.1
3,420,636	+				-0.5
3,420,636	+				+0.1
3,420,636	+				-1.8
3,420,636	+				-0.2
3,420,636	+				+0.3
3,420,636	+				-0.8
3,420,636	+				-0.5
3,420,636	+				-1.3
3,420,636	+				-1.4
3,420,636	+				-1.2
3,420,636	+				+0.1
3,420,636	+				-0.5
3,420,636	+				+2.0
3,420,636	+				-0.3
3,420,636	+				-0.3
3,420,636	+				+0.1
3,420,636	+				+1.1
3,420,637	-				-1.1
3,420,637	-				-0.2
3,420,637	-				-1.6
3,420,637	-				-1.9
3,420,637	-				-1.2
3,420,637	-				-0.1
3,420,637	-				-0.1
3,420,637	-				-0.4
3,420,637	-				-2.2
3,420,637	-				-0.9
3,420,637	-				-1.1
3,420,637	-				-1.7
3,420,637	-				+1.4
3,420,637	-				-0.7
3,420,637	-				-0.1
3,420,637	-				+0.0
3,420,637	-				+0.2
3,420,637	-				-0.0
3,420,640	+				+0.1
3,420,640	+				+2.7
3,420,640	+				-0.6
3,420,640	+				-1.7
3,420,640	+				-1.3
3,420,640	+				+1.3
3,420,640	+				-1.5
3,420,640	+				+0.1
3,420,640	+				-0.2
3,420,640	+				+0.4
3,420,640	+				-1.2
3,420,640	+				-1.2
3,420,640	+				-0.5
3,420,640	+				+0.8
3,420,640	+				+0.1
3,420,640	+				-0.8
3,420,640	+				-0.9
3,420,640	+				-0.8
3,420,640	+				+0.1
3,420,640	+				+0.1
3,420,641	-				-0.5
3,420,641	-				+0.4
3,420,641	-				-0.0
3,420,641	-				-0.9
3,420,641	-				-0.1
3,420,641	-				+2.7
3,420,641	-				-0.1
3,420,641	-				-1.8
3,420,641	-				-0.5
3,420,641	-				-1.7
3,420,641	-				-1.0
3,420,641	-				-0.9
3,420,641	-				-1.3
3,420,641	-				-0.3
3,420,641	-				-1.4
3,420,641	-				+1.1
3,420,641	-				-0.2
3,420,641	-				-0.9