Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3079

Experiment: MoYLS4 with Vanillin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3077 and mazG are separated by 115 nucleotidesmazG and DvMF_3079 overlap by 1 nucleotidesDvMF_3079 and DvMF_3080 are separated by 67 nucleotidesDvMF_3080 and DvMF_3081 are separated by 214 nucleotidesDvMF_3081 and DvMF_3082 are separated by 228 nucleotides DvMF_3077: DvMF_3077 - Colicin V production protein (RefSeq), at 3,886,409 to 3,886,885 _3077 DvMF_3078: mazG - nucleoside triphosphate pyrophosphohydrolase (RefSeq), at 3,887,001 to 3,887,864 mazG DvMF_3079: DvMF_3079 - hypothetical protein (RefSeq), at 3,887,864 to 3,889,366 _3079 DvMF_3080: DvMF_3080 - hypothetical protein (RefSeq), at 3,889,434 to 3,889,640 _3080 DvMF_3081: DvMF_3081 - hypothetical protein (RefSeq), at 3,889,855 to 3,890,037 _3081 DvMF_3082: DvMF_3082 - protein of unknown function UPF0118 (RefSeq), at 3,890,266 to 3,891,459 _3082 Position (kb) 3887 3888 3889 3890Strain fitness (log2 ratio) -1 0 1at 3888.158 kb on - strand, within DvMF_3079at 3888.287 kb on - strand, within DvMF_3079at 3888.958 kb on - strand, within DvMF_3079at 3889.022 kb on - strand, within DvMF_3079at 3889.173 kb on + strand, within DvMF_3079at 3889.408 kb on + strandat 3889.457 kb on + strand, within DvMF_3080at 3889.457 kb on + strand, within DvMF_3080at 3889.465 kb on - strand, within DvMF_3080at 3889.489 kb on + strand, within DvMF_3080at 3889.562 kb on - strand, within DvMF_3080at 3889.741 kb on - strandat 3889.810 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 10 mM
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3,888,158 - DvMF_3079 0.20 -0.3
3,888,287 - DvMF_3079 0.28 -0.6
3,888,958 - DvMF_3079 0.73 -0.7
3,889,022 - DvMF_3079 0.77 -1.0
3,889,173 + DvMF_3079 0.87 -0.5
3,889,408 + -0.2
3,889,457 + DvMF_3080 0.11 -0.4
3,889,457 + DvMF_3080 0.11 +0.6
3,889,465 - DvMF_3080 0.15 -0.4
3,889,489 + DvMF_3080 0.27 -0.3
3,889,562 - DvMF_3080 0.62 -0.3
3,889,741 - -1.0
3,889,810 + -1.3

Or see this region's nucleotide sequence