Experiment: MoYLS4 with Vanillin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3077 and mazG are separated by 115 nucleotides mazG and DvMF_3079 overlap by 1 nucleotides DvMF_3079 and DvMF_3080 are separated by 67 nucleotides DvMF_3080 and DvMF_3081 are separated by 214 nucleotides DvMF_3081 and DvMF_3082 are separated by 228 nucleotides
DvMF_3077: DvMF_3077 - Colicin V production protein (RefSeq), at 3,886,409 to 3,886,885
_3077
DvMF_3078: mazG - nucleoside triphosphate pyrophosphohydrolase (RefSeq), at 3,887,001 to 3,887,864
mazG
DvMF_3079: DvMF_3079 - hypothetical protein (RefSeq), at 3,887,864 to 3,889,366
_3079
DvMF_3080: DvMF_3080 - hypothetical protein (RefSeq), at 3,889,434 to 3,889,640
_3080
DvMF_3081: DvMF_3081 - hypothetical protein (RefSeq), at 3,889,855 to 3,890,037
_3081
DvMF_3082: DvMF_3082 - protein of unknown function UPF0118 (RefSeq), at 3,890,266 to 3,891,459
_3082
Position (kb)
3887
3888
3889
3890 Strain fitness (log2 ratio)
-1
0
1 at 3888.158 kb on - strand, within DvMF_3079 at 3888.287 kb on - strand, within DvMF_3079 at 3888.958 kb on - strand, within DvMF_3079 at 3889.022 kb on - strand, within DvMF_3079 at 3889.173 kb on + strand, within DvMF_3079 at 3889.408 kb on + strand at 3889.457 kb on + strand, within DvMF_3080 at 3889.457 kb on + strand, within DvMF_3080 at 3889.465 kb on - strand, within DvMF_3080 at 3889.489 kb on + strand, within DvMF_3080 at 3889.562 kb on - strand, within DvMF_3080 at 3889.741 kb on - strand at 3889.810 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 10 mM remove 3,888,158 - DvMF_3079 0.20 -0.3 3,888,287 - DvMF_3079 0.28 -0.6 3,888,958 - DvMF_3079 0.73 -0.7 3,889,022 - DvMF_3079 0.77 -1.0 3,889,173 + DvMF_3079 0.87 -0.5 3,889,408 + -0.2 3,889,457 + DvMF_3080 0.11 -0.4 3,889,457 + DvMF_3080 0.11 +0.6 3,889,465 - DvMF_3080 0.15 -0.4 3,889,489 + DvMF_3080 0.27 -0.3 3,889,562 - DvMF_3080 0.62 -0.3 3,889,741 - -1.0 3,889,810 + -1.3
Or see this region's nucleotide sequence