Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2332

Experiment: MoYLS4 with Vanillin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2331 and DvMF_2332 are separated by 487 nucleotidesDvMF_2332 and DvMF_2333 are separated by 436 nucleotides DvMF_2331: DvMF_2331 - hypothetical protein (RefSeq), at 2,938,916 to 2,939,167 _2331 DvMF_2332: DvMF_2332 - response regulator receiver protein (RefSeq), at 2,939,655 to 2,940,023 _2332 DvMF_2333: DvMF_2333 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,940,460 to 2,942,283 _2333 Position (kb) 2939 2940 2941Strain fitness (log2 ratio) -2 -1 0 1at 2938.657 kb on - strandat 2938.783 kb on + strandat 2938.896 kb on + strandat 2938.904 kb on - strandat 2938.985 kb on - strand, within DvMF_2331at 2939.249 kb on + strandat 2939.716 kb on - strand, within DvMF_2332at 2939.883 kb on - strand, within DvMF_2332at 2939.957 kb on + strand, within DvMF_2332at 2939.987 kb on + strandat 2940.446 kb on + strandat 2940.579 kb on + strandat 2940.797 kb on - strand, within DvMF_2333at 2940.808 kb on + strand, within DvMF_2333at 2940.819 kb on + strand, within DvMF_2333at 2940.898 kb on + strand, within DvMF_2333

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 10 mM
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2,938,657 - -0.1
2,938,783 + -0.1
2,938,896 + -0.3
2,938,904 - -0.3
2,938,985 - DvMF_2331 0.27 -2.6
2,939,249 + -1.3
2,939,716 - DvMF_2332 0.17 +0.5
2,939,883 - DvMF_2332 0.62 +0.1
2,939,957 + DvMF_2332 0.82 +0.7
2,939,987 + -0.4
2,940,446 + -0.3
2,940,579 + -1.3
2,940,797 - DvMF_2333 0.18 -0.5
2,940,808 + DvMF_2333 0.19 +0.4
2,940,819 + DvMF_2333 0.20 -0.4
2,940,898 + DvMF_2333 0.24 -1.1

Or see this region's nucleotide sequence