Experiment: MoYLS4 with Vanillin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2319 and DvMF_R0067 are separated by 206 nucleotides DvMF_R0067 and DvMF_2320 are separated by 200 nucleotides DvMF_2320 and DvMF_2321 are separated by 357 nucleotides
DvMF_2319: DvMF_2319 - phosphoesterase, Icc protein-like protein (RefSeq), at 2,918,195 to 2,918,872
_2319
DvMF_R0067: DvMF_R0067 - tRNA-Met (RefSeq), at 2,919,079 to 2,919,155
_R0067
DvMF_2320: DvMF_2320 - 6-phosphogluconate dehydrogenase NAD-binding (RefSeq), at 2,919,356 to 2,920,219
_2320
DvMF_2321: DvMF_2321 - hypothetical protein (RefSeq), at 2,920,577 to 2,921,281
_2321
Position (kb)
2919
2920
2921 Strain fitness (log2 ratio)
-1
0
1
2 at 2918.411 kb on - strand, within DvMF_2319 at 2918.411 kb on - strand, within DvMF_2319 at 2918.483 kb on - strand, within DvMF_2319 at 2918.513 kb on - strand, within DvMF_2319 at 2918.650 kb on + strand, within DvMF_2319 at 2918.722 kb on + strand, within DvMF_2319 at 2918.757 kb on + strand, within DvMF_2319 at 2919.321 kb on - strand at 2919.332 kb on - strand at 2919.417 kb on - strand at 2919.418 kb on - strand at 2919.422 kb on + strand at 2919.783 kb on + strand, within DvMF_2320 at 2919.798 kb on + strand, within DvMF_2320 at 2919.936 kb on - strand, within DvMF_2320 at 2920.102 kb on - strand, within DvMF_2320 at 2920.413 kb on + strand at 2920.432 kb on + strand at 2920.500 kb on - strand at 2920.528 kb on - strand at 2920.661 kb on - strand, within DvMF_2321 at 2920.833 kb on - strand, within DvMF_2321 at 2921.028 kb on + strand, within DvMF_2321 at 2921.094 kb on - strand, within DvMF_2321 at 2921.123 kb on + strand, within DvMF_2321
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 10 mM remove 2,918,411 - DvMF_2319 0.32 -0.3 2,918,411 - DvMF_2319 0.32 -1.5 2,918,483 - DvMF_2319 0.42 -0.9 2,918,513 - DvMF_2319 0.47 +0.7 2,918,650 + DvMF_2319 0.67 -0.8 2,918,722 + DvMF_2319 0.78 -0.0 2,918,757 + DvMF_2319 0.83 -0.4 2,919,321 - -0.7 2,919,332 - -0.3 2,919,417 - +0.1 2,919,418 - -0.3 2,919,422 + -0.9 2,919,783 + DvMF_2320 0.49 -0.7 2,919,798 + DvMF_2320 0.51 +2.2 2,919,936 - DvMF_2320 0.67 -0.1 2,920,102 - DvMF_2320 0.86 -0.7 2,920,413 + +0.6 2,920,432 + -0.9 2,920,500 - -1.4 2,920,528 - +0.1 2,920,661 - DvMF_2321 0.12 -0.2 2,920,833 - DvMF_2321 0.36 -0.6 2,921,028 + DvMF_2321 0.64 -0.3 2,921,094 - DvMF_2321 0.73 -1.1 2,921,123 + DvMF_2321 0.77 -0.1
Or see this region's nucleotide sequence