Experiment: MoYLS4 with Vanillin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2272 and DvMF_2273 are separated by 697 nucleotides DvMF_2273 and DvMF_2274 are separated by 89 nucleotides
DvMF_2272: DvMF_2272 - hypothetical protein (RefSeq), at 2,854,675 to 2,855,430
_2272
DvMF_2273: DvMF_2273 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 2,856,128 to 2,859,799
_2273
DvMF_2274: DvMF_2274 - Three-deoxy-D-manno-octulosonic-acid transferase domain protein (RefSeq), at 2,859,889 to 2,861,364
_2274
Position (kb)
2856
2857
2858
2859
2860 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2855.483 kb on + strand at 2855.557 kb on + strand at 2855.557 kb on + strand at 2855.557 kb on + strand at 2855.565 kb on - strand at 2855.796 kb on + strand at 2856.203 kb on + strand at 2856.206 kb on - strand at 2856.206 kb on - strand at 2856.221 kb on - strand at 2856.303 kb on + strand at 2856.392 kb on + strand at 2856.398 kb on + strand at 2856.453 kb on + strand at 2856.509 kb on - strand, within DvMF_2273 at 2856.849 kb on + strand, within DvMF_2273 at 2856.882 kb on - strand, within DvMF_2273 at 2856.885 kb on + strand, within DvMF_2273 at 2856.895 kb on + strand, within DvMF_2273 at 2857.003 kb on + strand, within DvMF_2273 at 2857.420 kb on - strand, within DvMF_2273 at 2857.445 kb on + strand, within DvMF_2273 at 2857.776 kb on + strand, within DvMF_2273 at 2857.784 kb on - strand, within DvMF_2273 at 2857.784 kb on - strand, within DvMF_2273 at 2857.902 kb on - strand, within DvMF_2273 at 2857.913 kb on - strand, within DvMF_2273 at 2857.933 kb on - strand, within DvMF_2273 at 2857.961 kb on + strand, within DvMF_2273 at 2858.198 kb on + strand, within DvMF_2273 at 2858.392 kb on - strand, within DvMF_2273 at 2858.443 kb on + strand, within DvMF_2273 at 2858.828 kb on + strand, within DvMF_2273 at 2858.905 kb on + strand, within DvMF_2273 at 2858.919 kb on + strand, within DvMF_2273 at 2859.130 kb on + strand, within DvMF_2273 at 2859.193 kb on + strand, within DvMF_2273 at 2859.296 kb on - strand, within DvMF_2273 at 2859.313 kb on + strand, within DvMF_2273 at 2859.340 kb on - strand, within DvMF_2273 at 2859.887 kb on + strand at 2859.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 10 mM remove 2,855,483 + -0.3 2,855,557 + -0.7 2,855,557 + +0.1 2,855,557 + -0.5 2,855,565 - -1.6 2,855,796 + -1.0 2,856,203 + +0.4 2,856,206 - +0.8 2,856,206 - -0.5 2,856,221 - +0.3 2,856,303 + +1.2 2,856,392 + +0.5 2,856,398 + +1.1 2,856,453 + +3.2 2,856,509 - DvMF_2273 0.10 -0.2 2,856,849 + DvMF_2273 0.20 +3.3 2,856,882 - DvMF_2273 0.21 +0.1 2,856,885 + DvMF_2273 0.21 +1.0 2,856,895 + DvMF_2273 0.21 +0.3 2,857,003 + DvMF_2273 0.24 -0.2 2,857,420 - DvMF_2273 0.35 +0.4 2,857,445 + DvMF_2273 0.36 +0.5 2,857,776 + DvMF_2273 0.45 +0.4 2,857,784 - DvMF_2273 0.45 +0.8 2,857,784 - DvMF_2273 0.45 +0.4 2,857,902 - DvMF_2273 0.48 +0.3 2,857,913 - DvMF_2273 0.49 +3.2 2,857,933 - DvMF_2273 0.49 +0.8 2,857,961 + DvMF_2273 0.50 +0.1 2,858,198 + DvMF_2273 0.56 +0.6 2,858,392 - DvMF_2273 0.62 +1.2 2,858,443 + DvMF_2273 0.63 -0.0 2,858,828 + DvMF_2273 0.74 +0.5 2,858,905 + DvMF_2273 0.76 +0.0 2,858,919 + DvMF_2273 0.76 +0.7 2,859,130 + DvMF_2273 0.82 +0.4 2,859,193 + DvMF_2273 0.83 +0.6 2,859,296 - DvMF_2273 0.86 +0.5 2,859,313 + DvMF_2273 0.87 +0.2 2,859,340 - DvMF_2273 0.87 +0.7 2,859,887 + -0.9 2,859,905 - -0.5
Or see this region's nucleotide sequence