Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2268

Experiment: MoYLS4 with Vanillin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2267 and DvMF_2268 are separated by 743 nucleotidesDvMF_2268 and DvMF_2269 are separated by 207 nucleotides DvMF_2267: DvMF_2267 - peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin (RefSeq), at 2,848,310 to 2,849,344 _2267 DvMF_2268: DvMF_2268 - branched-chain amino acid aminotransferase (RefSeq), at 2,850,088 to 2,851,011 _2268 DvMF_2269: DvMF_2269 - DNA polymerase III, subunits gamma and tau (RefSeq), at 2,851,219 to 2,853,285 _2269 Position (kb) 2850 2851 2852Strain fitness (log2 ratio) -1 0 1at 2849.223 kb on - strand, within DvMF_2267at 2849.345 kb on - strandat 2849.496 kb on + strandat 2849.499 kb on - strandat 2849.504 kb on - strandat 2849.537 kb on - strandat 2849.544 kb on - strandat 2849.736 kb on + strandat 2849.895 kb on + strandat 2850.071 kb on + strandat 2850.151 kb on - strandat 2850.170 kb on - strandat 2850.174 kb on + strandat 2850.182 kb on - strand, within DvMF_2268at 2850.691 kb on - strand, within DvMF_2268at 2850.846 kb on - strand, within DvMF_2268at 2850.846 kb on - strand, within DvMF_2268at 2851.005 kb on + strandat 2851.019 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 10 mM
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2,849,223 - DvMF_2267 0.88 -0.9
2,849,345 - -0.4
2,849,496 + -0.6
2,849,499 - -1.0
2,849,504 - -0.5
2,849,537 - -0.3
2,849,544 - +0.1
2,849,736 + -1.1
2,849,895 + -0.6
2,850,071 + +0.3
2,850,151 - -0.0
2,850,170 - +0.1
2,850,174 + +0.7
2,850,182 - DvMF_2268 0.10 +0.5
2,850,691 - DvMF_2268 0.65 +1.3
2,850,846 - DvMF_2268 0.82 +0.1
2,850,846 - DvMF_2268 0.82 +0.3
2,851,005 + +0.6
2,851,019 - -0.0

Or see this region's nucleotide sequence