Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2227

Experiment: MoYLS4 with Vanillin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2226 and DvMF_2227 are separated by 448 nucleotidesDvMF_2227 and DvMF_2228 are separated by 61 nucleotidesDvMF_2228 and DvMF_2229 are separated by 323 nucleotides DvMF_2226: DvMF_2226 - type IV pilus assembly PilZ (RefSeq), at 2,788,005 to 2,788,403 _2226 DvMF_2227: DvMF_2227 - Dinitrogenase iron-molybdenum cofactor biosynthesis protein (RefSeq), at 2,788,852 to 2,789,220 _2227 DvMF_2228: DvMF_2228 - SEC-C motif domain protein (RefSeq), at 2,789,282 to 2,789,779 _2228 DvMF_2229: DvMF_2229 - hypothetical protein (RefSeq), at 2,790,103 to 2,791,221 _2229 Position (kb) 2788 2789 2790Strain fitness (log2 ratio) -1 0 1at 2787.930 kb on + strandat 2788.194 kb on - strand, within DvMF_2226at 2788.244 kb on + strand, within DvMF_2226at 2788.353 kb on + strand, within DvMF_2226at 2788.813 kb on - strandat 2788.914 kb on + strand, within DvMF_2227at 2788.922 kb on - strand, within DvMF_2227at 2789.055 kb on + strand, within DvMF_2227at 2789.101 kb on - strand, within DvMF_2227at 2789.324 kb on - strandat 2789.502 kb on - strand, within DvMF_2228at 2789.525 kb on - strand, within DvMF_2228at 2789.958 kb on + strandat 2789.963 kb on + strandat 2789.977 kb on + strandat 2789.990 kb on - strandat 2789.995 kb on - strandat 2790.005 kb on - strandat 2790.005 kb on - strandat 2790.010 kb on - strandat 2790.036 kb on - strandat 2790.173 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 10 mM
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2,787,930 + -0.4
2,788,194 - DvMF_2226 0.47 +1.6
2,788,244 + DvMF_2226 0.60 -0.7
2,788,353 + DvMF_2226 0.87 -0.8
2,788,813 - -0.9
2,788,914 + DvMF_2227 0.17 -0.2
2,788,922 - DvMF_2227 0.19 -0.4
2,789,055 + DvMF_2227 0.55 +1.5
2,789,101 - DvMF_2227 0.67 +0.2
2,789,324 - -0.7
2,789,502 - DvMF_2228 0.44 -0.6
2,789,525 - DvMF_2228 0.49 +0.5
2,789,958 + -0.6
2,789,963 + -0.7
2,789,977 + +0.1
2,789,990 - +0.7
2,789,995 - -0.2
2,790,005 - +0.6
2,790,005 - -0.9
2,790,010 - +0.3
2,790,036 - -0.6
2,790,173 - +0.6

Or see this region's nucleotide sequence