Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1838

Experiment: MoYLS4 with Vanillin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1837 and DvMF_1838 overlap by 8 nucleotidesDvMF_1838 and DvMF_1839 are separated by 57 nucleotides DvMF_1837: DvMF_1837 - glycosyl transferase family 2 (RefSeq), at 2,246,324 to 2,247,376 _1837 DvMF_1838: DvMF_1838 - Radical SAM domain protein (RefSeq), at 2,247,369 to 2,248,844 _1838 DvMF_1839: DvMF_1839 - Methyltransferase type 11 (RefSeq), at 2,248,902 to 2,250,038 _1839 Position (kb) 2247 2248 2249Strain fitness (log2 ratio) -1 0 1at 2246.381 kb on - strandat 2246.388 kb on + strandat 2246.445 kb on + strand, within DvMF_1837at 2246.687 kb on - strand, within DvMF_1837at 2247.278 kb on + strandat 2247.311 kb on + strandat 2247.652 kb on - strand, within DvMF_1838at 2247.667 kb on + strand, within DvMF_1838at 2247.779 kb on + strand, within DvMF_1838at 2247.804 kb on - strand, within DvMF_1838at 2247.825 kb on - strand, within DvMF_1838at 2247.863 kb on + strand, within DvMF_1838at 2247.871 kb on - strand, within DvMF_1838at 2247.916 kb on - strand, within DvMF_1838at 2248.023 kb on + strand, within DvMF_1838at 2248.144 kb on + strand, within DvMF_1838at 2248.152 kb on - strand, within DvMF_1838at 2248.157 kb on - strand, within DvMF_1838at 2248.235 kb on - strand, within DvMF_1838at 2248.274 kb on + strand, within DvMF_1838at 2248.302 kb on + strand, within DvMF_1838at 2248.341 kb on + strand, within DvMF_1838at 2248.421 kb on - strand, within DvMF_1838at 2248.436 kb on - strand, within DvMF_1838at 2248.728 kb on - strandat 2248.834 kb on + strandat 2248.841 kb on - strandat 2249.217 kb on - strand, within DvMF_1839at 2249.398 kb on - strand, within DvMF_1839at 2249.484 kb on + strand, within DvMF_1839at 2249.484 kb on + strand, within DvMF_1839at 2249.492 kb on - strand, within DvMF_1839at 2249.492 kb on - strand, within DvMF_1839at 2249.750 kb on + strand, within DvMF_1839at 2249.816 kb on + strand, within DvMF_1839at 2249.818 kb on - strand, within DvMF_1839at 2249.828 kb on - strand, within DvMF_1839

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 10 mM
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2,246,381 - -0.3
2,246,388 + +0.5
2,246,445 + DvMF_1837 0.11 -1.2
2,246,687 - DvMF_1837 0.34 +1.2
2,247,278 + -0.6
2,247,311 + +0.0
2,247,652 - DvMF_1838 0.19 -0.5
2,247,667 + DvMF_1838 0.20 -0.5
2,247,779 + DvMF_1838 0.28 -1.4
2,247,804 - DvMF_1838 0.29 -0.4
2,247,825 - DvMF_1838 0.31 -0.3
2,247,863 + DvMF_1838 0.33 +0.0
2,247,871 - DvMF_1838 0.34 -0.3
2,247,916 - DvMF_1838 0.37 -0.9
2,248,023 + DvMF_1838 0.44 -0.0
2,248,144 + DvMF_1838 0.53 -0.5
2,248,152 - DvMF_1838 0.53 -0.6
2,248,157 - DvMF_1838 0.53 -0.7
2,248,235 - DvMF_1838 0.59 +0.4
2,248,274 + DvMF_1838 0.61 -0.5
2,248,302 + DvMF_1838 0.63 +0.4
2,248,341 + DvMF_1838 0.66 -0.5
2,248,421 - DvMF_1838 0.71 +0.6
2,248,436 - DvMF_1838 0.72 -1.2
2,248,728 - +0.0
2,248,834 + -0.4
2,248,841 - -0.3
2,249,217 - DvMF_1839 0.28 -0.7
2,249,398 - DvMF_1839 0.44 -0.9
2,249,484 + DvMF_1839 0.51 -0.2
2,249,484 + DvMF_1839 0.51 +0.8
2,249,492 - DvMF_1839 0.52 -0.5
2,249,492 - DvMF_1839 0.52 -0.8
2,249,750 + DvMF_1839 0.75 -0.3
2,249,816 + DvMF_1839 0.80 -0.5
2,249,818 - DvMF_1839 0.81 +0.1
2,249,828 - DvMF_1839 0.81 +0.2

Or see this region's nucleotide sequence