Experiment: MoYLS4 with Vanillin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1685 and DvMF_1686 are separated by 157 nucleotides DvMF_1686 and DvMF_1687 are separated by 341 nucleotides DvMF_1687 and DvMF_R0048 are separated by 10 nucleotides DvMF_R0048 and DvMF_1688 are separated by 328 nucleotides
DvMF_1685: DvMF_1685 - hypothetical protein (RefSeq), at 2,053,441 to 2,053,764
_1685
DvMF_1686: DvMF_1686 - hypothetical protein (RefSeq), at 2,053,922 to 2,054,101
_1686
DvMF_1687: DvMF_1687 - integrase family protein (RefSeq), at 2,054,443 to 2,055,510
_1687
DvMF_R0048: DvMF_R0048 - tRNA-Val (RefSeq), at 2,055,521 to 2,055,596
_R0048
DvMF_1688: DvMF_1688 - hypothetical protein (RefSeq), at 2,055,925 to 2,057,079
_1688
Position (kb)
2054
2055
2056 Strain fitness (log2 ratio)
-2
-1
0
1 at 2053.578 kb on + strand, within DvMF_1685 at 2053.719 kb on + strand, within DvMF_1685 at 2053.727 kb on - strand, within DvMF_1685 at 2053.737 kb on - strand at 2053.918 kb on - strand at 2053.957 kb on + strand, within DvMF_1686 at 2053.975 kb on - strand, within DvMF_1686 at 2054.261 kb on - strand at 2054.264 kb on + strand at 2054.375 kb on + strand at 2054.425 kb on + strand at 2054.427 kb on + strand at 2054.534 kb on - strand at 2054.537 kb on - strand at 2054.591 kb on - strand, within DvMF_1687 at 2054.714 kb on + strand, within DvMF_1687 at 2054.767 kb on + strand, within DvMF_1687 at 2054.790 kb on + strand, within DvMF_1687 at 2054.888 kb on + strand, within DvMF_1687 at 2054.961 kb on - strand, within DvMF_1687 at 2055.001 kb on + strand, within DvMF_1687 at 2055.006 kb on + strand, within DvMF_1687 at 2055.128 kb on - strand, within DvMF_1687 at 2055.137 kb on + strand, within DvMF_1687 at 2055.272 kb on - strand, within DvMF_1687 at 2055.376 kb on + strand, within DvMF_1687 at 2055.376 kb on + strand, within DvMF_1687 at 2055.413 kb on + strand at 2055.523 kb on - strand at 2055.706 kb on + strand at 2055.714 kb on - strand at 2055.773 kb on + strand at 2055.906 kb on - strand at 2056.477 kb on - strand, within DvMF_1688 at 2056.500 kb on - strand, within DvMF_1688
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 10 mM remove 2,053,578 + DvMF_1685 0.42 -0.7 2,053,719 + DvMF_1685 0.86 -0.2 2,053,727 - DvMF_1685 0.88 -1.3 2,053,737 - -0.5 2,053,918 - -0.3 2,053,957 + DvMF_1686 0.19 -0.7 2,053,975 - DvMF_1686 0.29 -1.0 2,054,261 - -0.9 2,054,264 + -0.3 2,054,375 + -1.2 2,054,425 + -0.3 2,054,427 + -0.8 2,054,534 - -0.4 2,054,537 - -1.1 2,054,591 - DvMF_1687 0.14 -0.5 2,054,714 + DvMF_1687 0.25 -0.6 2,054,767 + DvMF_1687 0.30 -0.8 2,054,790 + DvMF_1687 0.32 +0.3 2,054,888 + DvMF_1687 0.42 -0.6 2,054,961 - DvMF_1687 0.49 -1.0 2,055,001 + DvMF_1687 0.52 -0.1 2,055,006 + DvMF_1687 0.53 -0.5 2,055,128 - DvMF_1687 0.64 +0.8 2,055,137 + DvMF_1687 0.65 -0.5 2,055,272 - DvMF_1687 0.78 +0.1 2,055,376 + DvMF_1687 0.87 -0.6 2,055,376 + DvMF_1687 0.87 -0.1 2,055,413 + -0.6 2,055,523 - -0.4 2,055,706 + -2.0 2,055,714 - -0.6 2,055,773 + -0.5 2,055,906 - -2.0 2,056,477 - DvMF_1688 0.48 +0.4 2,056,500 - DvMF_1688 0.50 -0.1
Or see this region's nucleotide sequence