Experiment: MoYLS4 with Vanillin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1496 and DvMF_1497 overlap by 1 nucleotides DvMF_1497 and DvMF_1498 overlap by 4 nucleotides
DvMF_1496: DvMF_1496 - anaerobic cobalt chelatase (RefSeq), at 1,846,656 to 1,847,657
_1496
DvMF_1497: DvMF_1497 - transport system permease protein (RefSeq), at 1,847,657 to 1,848,820
_1497
DvMF_1498: DvMF_1498 - ABC transporter related (RefSeq), at 1,848,817 to 1,849,830
_1498
Position (kb)
1847
1848
1849 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1846.933 kb on - strand, within DvMF_1496 at 1847.048 kb on + strand, within DvMF_1496 at 1847.073 kb on + strand, within DvMF_1496 at 1847.249 kb on - strand, within DvMF_1496 at 1847.275 kb on - strand, within DvMF_1496 at 1847.298 kb on + strand, within DvMF_1496 at 1847.365 kb on - strand, within DvMF_1496 at 1847.579 kb on - strand at 1847.651 kb on - strand at 1847.657 kb on + strand at 1847.695 kb on + strand at 1847.703 kb on - strand at 1847.703 kb on - strand at 1847.755 kb on + strand at 1847.926 kb on - strand, within DvMF_1497 at 1848.068 kb on + strand, within DvMF_1497 at 1848.252 kb on + strand, within DvMF_1497 at 1848.348 kb on + strand, within DvMF_1497 at 1848.493 kb on - strand, within DvMF_1497 at 1848.875 kb on + strand at 1849.294 kb on - strand, within DvMF_1498 at 1849.346 kb on + strand, within DvMF_1498 at 1849.346 kb on + strand, within DvMF_1498 at 1849.420 kb on + strand, within DvMF_1498 at 1849.425 kb on + strand, within DvMF_1498 at 1849.438 kb on - strand, within DvMF_1498 at 1849.507 kb on - strand, within DvMF_1498 at 1849.509 kb on + strand, within DvMF_1498 at 1849.542 kb on + strand, within DvMF_1498 at 1849.564 kb on + strand, within DvMF_1498 at 1849.740 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 10 mM remove 1,846,933 - DvMF_1496 0.28 -0.7 1,847,048 + DvMF_1496 0.39 -0.2 1,847,073 + DvMF_1496 0.42 +0.1 1,847,249 - DvMF_1496 0.59 +0.8 1,847,275 - DvMF_1496 0.62 -0.8 1,847,298 + DvMF_1496 0.64 -0.1 1,847,365 - DvMF_1496 0.71 -0.3 1,847,579 - -2.9 1,847,651 - -0.8 1,847,657 + -0.4 1,847,695 + -1.1 1,847,703 - +0.0 1,847,703 - +0.5 1,847,755 + -1.2 1,847,926 - DvMF_1497 0.23 -0.6 1,848,068 + DvMF_1497 0.35 -0.0 1,848,252 + DvMF_1497 0.51 +1.2 1,848,348 + DvMF_1497 0.59 -0.6 1,848,493 - DvMF_1497 0.72 -0.7 1,848,875 + +0.0 1,849,294 - DvMF_1498 0.47 -0.1 1,849,346 + DvMF_1498 0.52 -0.4 1,849,346 + DvMF_1498 0.52 -0.8 1,849,420 + DvMF_1498 0.59 -0.9 1,849,425 + DvMF_1498 0.60 -0.2 1,849,438 - DvMF_1498 0.61 +0.2 1,849,507 - DvMF_1498 0.68 -0.2 1,849,509 + DvMF_1498 0.68 +0.3 1,849,542 + DvMF_1498 0.71 -0.3 1,849,564 + DvMF_1498 0.74 -0.6 1,849,740 + -0.3
Or see this region's nucleotide sequence