Experiment: MoYLS4 with Vanillin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0774 and DvMF_0775 are separated by 159 nucleotides DvMF_0775 and DvMF_0776 are separated by 10 nucleotides DvMF_0776 and DvMF_0777 overlap by 4 nucleotides DvMF_0777 and DvMF_0778 are separated by 135 nucleotides
DvMF_0774: DvMF_0774 - CheA signal transduction histidine kinase (RefSeq), at 928,063 to 931,155
_0774
DvMF_0775: DvMF_0775 - response regulator receiver protein (RefSeq), at 931,315 to 931,683
_0775
DvMF_0776: DvMF_0776 - CheW protein (RefSeq), at 931,694 to 932,380
_0776
DvMF_0777: DvMF_0777 - Cobyrinic acid ac-diamide synthase (RefSeq), at 932,377 to 933,150
_0777
DvMF_0778: DvMF_0778 - MCP methyltransferase, CheR-type (RefSeq), at 933,286 to 934,164
_0778
Position (kb) 931
932
933 Strain fitness (log2 ratio) -1
0
1
2 at 930.839 kb on - strand, within DvMF_0774 at 930.917 kb on - strand at 931.168 kb on + strand at 931.445 kb on - strand, within DvMF_0775 at 931.607 kb on - strand, within DvMF_0775 at 931.646 kb on + strand, within DvMF_0775 at 931.838 kb on + strand, within DvMF_0776 at 932.004 kb on - strand, within DvMF_0776 at 932.062 kb on - strand, within DvMF_0776 at 932.461 kb on - strand, within DvMF_0777 at 932.461 kb on - strand, within DvMF_0777 at 932.893 kb on - strand, within DvMF_0777 at 933.095 kb on - strand at 933.154 kb on - strand at 933.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 10 mM remove 930,839 - DvMF_0774 0.90 +0.4 930,917 - -0.2 931,168 + -0.8 931,445 - DvMF_0775 0.35 +0.5 931,607 - DvMF_0775 0.79 +0.3 931,646 + DvMF_0775 0.90 +0.5 931,838 + DvMF_0776 0.21 -0.3 932,004 - DvMF_0776 0.45 -1.2 932,062 - DvMF_0776 0.54 +2.4 932,461 - DvMF_0777 0.11 -0.8 932,461 - DvMF_0777 0.11 -1.3 932,893 - DvMF_0777 0.67 +0.2 933,095 - -0.2 933,154 - -0.7 933,272 - -0.5
Or see this region's nucleotide sequence