Experiment: MoYLS4 with Vanillin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0418 and DvMF_0419 are separated by 96 nucleotides DvMF_0419 and DvMF_0420 are separated by 222 nucleotides
DvMF_0418: DvMF_0418 - biotin/acetyl-CoA-carboxylase ligase (RefSeq), at 492,816 to 493,985
_0418
DvMF_0419: DvMF_0419 - metal dependent phosphohydrolase (RefSeq), at 494,082 to 495,497
_0419
DvMF_0420: DvMF_0420 - putative manganese-dependent inorganic pyrophosphatase (RefSeq), at 495,720 to 496,640
_0420
Position (kb) 494
495
496 Strain fitness (log2 ratio) -1
0
1
2 at 493.728 kb on - strand, within DvMF_0418 at 493.745 kb on - strand, within DvMF_0418 at 493.887 kb on + strand at 493.887 kb on + strand at 493.923 kb on - strand at 494.116 kb on + strand at 494.143 kb on + strand at 494.250 kb on - strand, within DvMF_0419 at 494.575 kb on - strand, within DvMF_0419 at 494.582 kb on - strand, within DvMF_0419 at 494.604 kb on - strand, within DvMF_0419 at 494.708 kb on - strand, within DvMF_0419 at 494.739 kb on + strand, within DvMF_0419 at 494.744 kb on + strand, within DvMF_0419 at 494.863 kb on + strand, within DvMF_0419 at 494.868 kb on + strand, within DvMF_0419 at 494.876 kb on - strand, within DvMF_0419 at 495.078 kb on - strand, within DvMF_0419 at 495.079 kb on - strand, within DvMF_0419 at 495.256 kb on - strand, within DvMF_0419 at 495.401 kb on + strand at 495.566 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 10 mM remove 493,728 - DvMF_0418 0.78 -0.2 493,745 - DvMF_0418 0.79 -1.1 493,887 + -0.5 493,887 + +1.0 493,923 - -0.4 494,116 + +1.7 494,143 + -0.4 494,250 - DvMF_0419 0.12 -0.9 494,575 - DvMF_0419 0.35 +2.3 494,582 - DvMF_0419 0.35 -1.2 494,604 - DvMF_0419 0.37 +0.1 494,708 - DvMF_0419 0.44 -0.7 494,739 + DvMF_0419 0.46 -0.1 494,744 + DvMF_0419 0.47 -1.3 494,863 + DvMF_0419 0.55 -0.1 494,868 + DvMF_0419 0.56 +0.1 494,876 - DvMF_0419 0.56 -0.2 495,078 - DvMF_0419 0.70 -1.0 495,079 - DvMF_0419 0.70 +1.1 495,256 - DvMF_0419 0.83 +0.2 495,401 + -0.9 495,566 + -0.5
Or see this region's nucleotide sequence