Experiment: MoYLS4 with Vanillin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0213 and DvMF_0214 overlap by 4 nucleotides DvMF_0214 and DvMF_0215 are separated by 29 nucleotides DvMF_0215 and DvMF_0216 are separated by 17 nucleotides DvMF_0216 and DvMF_0217 are separated by 289 nucleotides
DvMF_0213: DvMF_0213 - multi-sensor signal transduction histidine kinase (RefSeq), at 239,751 to 241,919
_0213
DvMF_0214: DvMF_0214 - no description, at 241,916 to 241,990
_0214
DvMF_0215: DvMF_0215 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 242,020 to 243,606
_0215
DvMF_0216: DvMF_0216 - hypothetical protein (RefSeq), at 243,624 to 244,205
_0216
DvMF_0217: DvMF_0217 - Hpt protein (RefSeq), at 244,495 to 244,860
_0217
Position (kb) 242
243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 241.087 kb on + strand, within DvMF_0213 at 241.135 kb on + strand, within DvMF_0213 at 241.218 kb on - strand, within DvMF_0213 at 241.296 kb on + strand, within DvMF_0213 at 241.304 kb on - strand, within DvMF_0213 at 241.304 kb on - strand, within DvMF_0213 at 241.350 kb on - strand, within DvMF_0213 at 241.666 kb on + strand, within DvMF_0213 at 241.673 kb on - strand, within DvMF_0213 at 241.745 kb on + strand at 242.151 kb on - strand at 242.229 kb on + strand, within DvMF_0215 at 242.488 kb on - strand, within DvMF_0215 at 242.523 kb on - strand, within DvMF_0215 at 242.620 kb on + strand, within DvMF_0215 at 242.623 kb on - strand, within DvMF_0215 at 242.623 kb on - strand, within DvMF_0215 at 242.661 kb on + strand, within DvMF_0215 at 242.676 kb on + strand, within DvMF_0215 at 242.706 kb on + strand, within DvMF_0215 at 242.791 kb on + strand, within DvMF_0215 at 242.797 kb on - strand, within DvMF_0215 at 243.239 kb on - strand, within DvMF_0215 at 243.246 kb on - strand, within DvMF_0215 at 243.248 kb on + strand, within DvMF_0215 at 243.350 kb on - strand, within DvMF_0215 at 243.540 kb on + strand at 243.660 kb on - strand at 243.764 kb on - strand, within DvMF_0216 at 243.819 kb on + strand, within DvMF_0216 at 243.822 kb on - strand, within DvMF_0216 at 244.300 kb on - strand at 244.512 kb on - strand at 244.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 10 mM remove 241,087 + DvMF_0213 0.62 +2.5 241,135 + DvMF_0213 0.64 -1.5 241,218 - DvMF_0213 0.68 -1.2 241,296 + DvMF_0213 0.71 -1.7 241,304 - DvMF_0213 0.72 -2.6 241,304 - DvMF_0213 0.72 -0.5 241,350 - DvMF_0213 0.74 -3.2 241,666 + DvMF_0213 0.88 -0.7 241,673 - DvMF_0213 0.89 -0.1 241,745 + -1.2 242,151 - -3.2 242,229 + DvMF_0215 0.13 -1.4 242,488 - DvMF_0215 0.29 -1.4 242,523 - DvMF_0215 0.32 -2.9 242,620 + DvMF_0215 0.38 -1.7 242,623 - DvMF_0215 0.38 -0.0 242,623 - DvMF_0215 0.38 -1.5 242,661 + DvMF_0215 0.40 -1.9 242,676 + DvMF_0215 0.41 -1.3 242,706 + DvMF_0215 0.43 -2.7 242,791 + DvMF_0215 0.49 -2.5 242,797 - DvMF_0215 0.49 -2.7 243,239 - DvMF_0215 0.77 -0.6 243,246 - DvMF_0215 0.77 -2.2 243,248 + DvMF_0215 0.77 -2.6 243,350 - DvMF_0215 0.84 -1.0 243,540 + -1.1 243,660 - +0.3 243,764 - DvMF_0216 0.24 -0.1 243,819 + DvMF_0216 0.34 +0.8 243,822 - DvMF_0216 0.34 +0.0 244,300 - -0.1 244,512 - -0.4 244,513 - -0.3
Or see this region's nucleotide sequence