Strain Fitness in Sinorhizobium meliloti 1021 around SMc04359

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04357 and SMc04359 are separated by 363 nucleotidesSMc04359 and SMc04360 are separated by 35 nucleotides SMc04357: SMc04357 - hypothetical protein, at 2,236,802 to 2,237,503 SMc04357 SMc04359: SMc04359 - transmembrane protein, at 2,237,867 to 2,238,562 SMc04359 SMc04360: SMc04360 - hypothetical protein, at 2,238,598 to 2,239,497 SMc04360 Position (kb) 2237 2238 2239Strain fitness (log2 ratio) -3 -2 -1 0 1at 2236.897 kb on - strand, within SMc04357at 2237.005 kb on + strand, within SMc04357at 2237.006 kb on - strand, within SMc04357at 2237.006 kb on - strand, within SMc04357at 2237.399 kb on - strand, within SMc04357at 2237.435 kb on - strandat 2237.501 kb on + strandat 2237.501 kb on + strandat 2237.502 kb on - strandat 2237.502 kb on - strandat 2237.502 kb on - strandat 2237.502 kb on - strandat 2237.579 kb on - strandat 2237.634 kb on - strandat 2237.686 kb on + strandat 2237.686 kb on + strandat 2237.687 kb on - strandat 2237.742 kb on + strandat 2237.743 kb on - strandat 2237.743 kb on - strandat 2237.743 kb on - strandat 2237.839 kb on + strandat 2237.880 kb on - strandat 2237.880 kb on - strandat 2237.880 kb on - strandat 2237.880 kb on - strandat 2237.918 kb on + strandat 2238.229 kb on + strand, within SMc04359at 2238.230 kb on - strand, within SMc04359at 2238.230 kb on - strand, within SMc04359at 2238.251 kb on - strand, within SMc04359at 2238.251 kb on - strand, within SMc04359at 2238.289 kb on + strand, within SMc04359at 2238.291 kb on + strand, within SMc04359at 2238.292 kb on - strand, within SMc04359at 2238.292 kb on - strand, within SMc04359at 2238.292 kb on - strand, within SMc04359at 2238.292 kb on - strand, within SMc04359at 2238.347 kb on + strand, within SMc04359at 2239.031 kb on + strand, within SMc04360at 2239.031 kb on + strand, within SMc04360at 2239.032 kb on - strand, within SMc04360at 2239.032 kb on - strand, within SMc04360at 2239.032 kb on - strand, within SMc04360at 2239.197 kb on - strand, within SMc04360at 2239.243 kb on + strand, within SMc04360at 2239.323 kb on - strand, within SMc04360at 2239.353 kb on + strand, within SMc04360at 2239.531 kb on - strandat 2239.531 kb on - strandat 2239.531 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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2,236,897 - SMc04357 0.14 +0.0
2,237,005 + SMc04357 0.29 +0.6
2,237,006 - SMc04357 0.29 -1.6
2,237,006 - SMc04357 0.29 -0.7
2,237,399 - SMc04357 0.85 -1.0
2,237,435 - -1.0
2,237,501 + +0.3
2,237,501 + -2.0
2,237,502 - -3.3
2,237,502 - +0.0
2,237,502 - -0.9
2,237,502 - -1.0
2,237,579 - -0.4
2,237,634 - +1.2
2,237,686 + +0.0
2,237,686 + -1.3
2,237,687 - -0.7
2,237,742 + -0.7
2,237,743 - -1.4
2,237,743 - -3.1
2,237,743 - -0.9
2,237,839 + -0.4
2,237,880 - +0.9
2,237,880 - -1.0
2,237,880 - -0.4
2,237,880 - -3.5
2,237,918 + -2.0
2,238,229 + SMc04359 0.52 -2.8
2,238,230 - SMc04359 0.52 +0.2
2,238,230 - SMc04359 0.52 -2.1
2,238,251 - SMc04359 0.55 -0.9
2,238,251 - SMc04359 0.55 -0.7
2,238,289 + SMc04359 0.61 -3.3
2,238,291 + SMc04359 0.61 -0.3
2,238,292 - SMc04359 0.61 -0.5
2,238,292 - SMc04359 0.61 -0.9
2,238,292 - SMc04359 0.61 -1.5
2,238,292 - SMc04359 0.61 -1.5
2,238,347 + SMc04359 0.69 -0.5
2,239,031 + SMc04360 0.48 -2.9
2,239,031 + SMc04360 0.48 -0.3
2,239,032 - SMc04360 0.48 -3.6
2,239,032 - SMc04360 0.48 -2.0
2,239,032 - SMc04360 0.48 -1.1
2,239,197 - SMc04360 0.67 -2.0
2,239,243 + SMc04360 0.72 +1.7
2,239,323 - SMc04360 0.81 +0.8
2,239,353 + SMc04360 0.84 +0.8
2,239,531 - -1.9
2,239,531 - -0.7
2,239,531 - -0.3

Or see this region's nucleotide sequence