Experiment: Chlorite 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04357 and SMc04359 are separated by 363 nucleotides SMc04359 and SMc04360 are separated by 35 nucleotides
SMc04357: SMc04357 - hypothetical protein, at 2,236,802 to 2,237,503
SMc04357
SMc04359: SMc04359 - transmembrane protein, at 2,237,867 to 2,238,562
SMc04359
SMc04360: SMc04360 - hypothetical protein, at 2,238,598 to 2,239,497
SMc04360
Position (kb)
2237
2238
2239 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2236.897 kb on - strand, within SMc04357 at 2237.005 kb on + strand, within SMc04357 at 2237.006 kb on - strand, within SMc04357 at 2237.006 kb on - strand, within SMc04357 at 2237.399 kb on - strand, within SMc04357 at 2237.435 kb on - strand at 2237.501 kb on + strand at 2237.501 kb on + strand at 2237.502 kb on - strand at 2237.502 kb on - strand at 2237.502 kb on - strand at 2237.502 kb on - strand at 2237.579 kb on - strand at 2237.634 kb on - strand at 2237.686 kb on + strand at 2237.686 kb on + strand at 2237.687 kb on - strand at 2237.742 kb on + strand at 2237.743 kb on - strand at 2237.743 kb on - strand at 2237.743 kb on - strand at 2237.839 kb on + strand at 2237.880 kb on - strand at 2237.880 kb on - strand at 2237.880 kb on - strand at 2237.880 kb on - strand at 2237.918 kb on + strand at 2238.229 kb on + strand, within SMc04359 at 2238.230 kb on - strand, within SMc04359 at 2238.230 kb on - strand, within SMc04359 at 2238.251 kb on - strand, within SMc04359 at 2238.251 kb on - strand, within SMc04359 at 2238.289 kb on + strand, within SMc04359 at 2238.291 kb on + strand, within SMc04359 at 2238.292 kb on - strand, within SMc04359 at 2238.292 kb on - strand, within SMc04359 at 2238.292 kb on - strand, within SMc04359 at 2238.292 kb on - strand, within SMc04359 at 2238.347 kb on + strand, within SMc04359 at 2239.031 kb on + strand, within SMc04360 at 2239.031 kb on + strand, within SMc04360 at 2239.032 kb on - strand, within SMc04360 at 2239.032 kb on - strand, within SMc04360 at 2239.032 kb on - strand, within SMc04360 at 2239.197 kb on - strand, within SMc04360 at 2239.243 kb on + strand, within SMc04360 at 2239.323 kb on - strand, within SMc04360 at 2239.353 kb on + strand, within SMc04360 at 2239.531 kb on - strand at 2239.531 kb on - strand at 2239.531 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.1 mM remove 2,236,897 - SMc04357 0.14 +0.0 2,237,005 + SMc04357 0.29 +0.6 2,237,006 - SMc04357 0.29 -1.6 2,237,006 - SMc04357 0.29 -0.7 2,237,399 - SMc04357 0.85 -1.0 2,237,435 - -1.0 2,237,501 + +0.3 2,237,501 + -2.0 2,237,502 - -3.3 2,237,502 - +0.0 2,237,502 - -0.9 2,237,502 - -1.0 2,237,579 - -0.4 2,237,634 - +1.2 2,237,686 + +0.0 2,237,686 + -1.3 2,237,687 - -0.7 2,237,742 + -0.7 2,237,743 - -1.4 2,237,743 - -3.1 2,237,743 - -0.9 2,237,839 + -0.4 2,237,880 - +0.9 2,237,880 - -1.0 2,237,880 - -0.4 2,237,880 - -3.5 2,237,918 + -2.0 2,238,229 + SMc04359 0.52 -2.8 2,238,230 - SMc04359 0.52 +0.2 2,238,230 - SMc04359 0.52 -2.1 2,238,251 - SMc04359 0.55 -0.9 2,238,251 - SMc04359 0.55 -0.7 2,238,289 + SMc04359 0.61 -3.3 2,238,291 + SMc04359 0.61 -0.3 2,238,292 - SMc04359 0.61 -0.5 2,238,292 - SMc04359 0.61 -0.9 2,238,292 - SMc04359 0.61 -1.5 2,238,292 - SMc04359 0.61 -1.5 2,238,347 + SMc04359 0.69 -0.5 2,239,031 + SMc04360 0.48 -2.9 2,239,031 + SMc04360 0.48 -0.3 2,239,032 - SMc04360 0.48 -3.6 2,239,032 - SMc04360 0.48 -2.0 2,239,032 - SMc04360 0.48 -1.1 2,239,197 - SMc04360 0.67 -2.0 2,239,243 + SMc04360 0.72 +1.7 2,239,323 - SMc04360 0.81 +0.8 2,239,353 + SMc04360 0.84 +0.8 2,239,531 - -1.9 2,239,531 - -0.7 2,239,531 - -0.3
Or see this region's nucleotide sequence