Strain Fitness in Sinorhizobium meliloti 1021 around SMc04351

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04350 and SMc04351 are separated by 8 nucleotidesSMc04351 and SMc04352 are separated by 57 nucleotidesSMc04352 and SMc04357 are separated by 170 nucleotides SMc04350: SMc04350 - multidrug efflux system transmembrane protein, at 2,232,766 to 2,234,031 SMc04350 SMc04351: SMc04351 - transmembrane ATP-binding ABC transporter protein, at 2,234,040 to 2,235,983 SMc04351 SMc04352: SMc04352 - signal peptide protein, at 2,236,041 to 2,236,631 SMc04352 SMc04357: SMc04357 - hypothetical protein, at 2,236,802 to 2,237,503 SMc04357 Position (kb) 2234 2235 2236Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2233.396 kb on + strand, within SMc04350at 2233.408 kb on + strand, within SMc04350at 2233.408 kb on + strand, within SMc04350at 2233.408 kb on + strand, within SMc04350at 2233.409 kb on - strand, within SMc04350at 2233.579 kb on + strand, within SMc04350at 2233.579 kb on + strand, within SMc04350at 2233.580 kb on - strand, within SMc04350at 2233.580 kb on - strand, within SMc04350at 2233.675 kb on + strand, within SMc04350at 2233.675 kb on + strand, within SMc04350at 2233.675 kb on + strand, within SMc04350at 2233.676 kb on - strand, within SMc04350at 2233.676 kb on - strand, within SMc04350at 2234.055 kb on + strandat 2234.117 kb on + strandat 2234.117 kb on + strandat 2234.117 kb on + strandat 2234.117 kb on + strandat 2234.117 kb on + strandat 2234.117 kb on + strandat 2234.117 kb on + strandat 2234.117 kb on + strandat 2234.118 kb on - strandat 2234.118 kb on - strandat 2234.118 kb on - strandat 2234.118 kb on - strandat 2234.118 kb on - strandat 2234.118 kb on - strandat 2234.118 kb on - strandat 2234.118 kb on - strandat 2234.118 kb on - strandat 2234.118 kb on - strandat 2234.118 kb on - strandat 2234.118 kb on - strandat 2234.118 kb on - strandat 2234.118 kb on - strandat 2234.119 kb on + strandat 2234.120 kb on - strandat 2234.120 kb on - strandat 2234.120 kb on - strandat 2234.120 kb on - strandat 2234.120 kb on - strandat 2234.120 kb on - strandat 2234.129 kb on + strandat 2234.232 kb on + strandat 2234.232 kb on + strandat 2234.232 kb on + strandat 2234.233 kb on - strandat 2234.233 kb on - strandat 2234.322 kb on + strand, within SMc04351at 2234.323 kb on - strand, within SMc04351at 2234.849 kb on + strand, within SMc04351at 2235.132 kb on + strand, within SMc04351at 2235.231 kb on + strand, within SMc04351at 2235.231 kb on + strand, within SMc04351at 2235.232 kb on - strand, within SMc04351at 2235.232 kb on - strand, within SMc04351at 2235.232 kb on - strand, within SMc04351at 2235.232 kb on - strand, within SMc04351at 2235.232 kb on - strand, within SMc04351at 2235.306 kb on + strand, within SMc04351at 2235.306 kb on + strand, within SMc04351at 2235.306 kb on + strand, within SMc04351at 2235.487 kb on + strand, within SMc04351at 2235.488 kb on - strand, within SMc04351at 2235.488 kb on - strand, within SMc04351at 2235.745 kb on + strand, within SMc04351at 2235.745 kb on + strand, within SMc04351at 2235.746 kb on - strand, within SMc04351at 2235.746 kb on - strand, within SMc04351at 2235.828 kb on + strandat 2235.837 kb on - strandat 2236.079 kb on + strandat 2236.080 kb on - strandat 2236.080 kb on - strandat 2236.109 kb on - strand, within SMc04352at 2236.109 kb on - strand, within SMc04352at 2236.112 kb on + strandat 2236.112 kb on + strand, within SMc04352at 2236.112 kb on + strand, within SMc04352at 2236.113 kb on - strand, within SMc04352at 2236.114 kb on + strand, within SMc04352at 2236.114 kb on + strand, within SMc04352at 2236.115 kb on - strand, within SMc04352at 2236.310 kb on - strand, within SMc04352at 2236.538 kb on + strand, within SMc04352at 2236.539 kb on - strand, within SMc04352at 2236.658 kb on - strandat 2236.661 kb on + strandat 2236.661 kb on + strandat 2236.662 kb on - strandat 2236.662 kb on - strandat 2236.671 kb on + strandat 2236.672 kb on - strandat 2236.846 kb on - strandat 2236.897 kb on - strand, within SMc04357

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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2,233,396 + SMc04350 0.50 -0.6
2,233,408 + SMc04350 0.51 -0.8
2,233,408 + SMc04350 0.51 -2.5
2,233,408 + SMc04350 0.51 -1.7
2,233,409 - SMc04350 0.51 +0.2
2,233,579 + SMc04350 0.64 +0.1
2,233,579 + SMc04350 0.64 -0.8
2,233,580 - SMc04350 0.64 -3.2
2,233,580 - SMc04350 0.64 +0.6
2,233,675 + SMc04350 0.72 -0.7
2,233,675 + SMc04350 0.72 -0.8
2,233,675 + SMc04350 0.72 -0.9
2,233,676 - SMc04350 0.72 -1.2
2,233,676 - SMc04350 0.72 -1.2
2,234,055 + -0.2
2,234,117 + -1.5
2,234,117 + -1.8
2,234,117 + -0.2
2,234,117 + +0.7
2,234,117 + -1.5
2,234,117 + -1.4
2,234,117 + +1.4
2,234,117 + -0.1
2,234,118 - -1.9
2,234,118 - +1.4
2,234,118 - -0.4
2,234,118 - -0.4
2,234,118 - -3.4
2,234,118 - -1.9
2,234,118 - +0.6
2,234,118 - -1.9
2,234,118 - -0.0
2,234,118 - -0.3
2,234,118 - -1.0
2,234,118 - -1.1
2,234,118 - +0.3
2,234,118 - -0.7
2,234,119 + -0.5
2,234,120 - -1.0
2,234,120 - +1.4
2,234,120 - +0.6
2,234,120 - +1.5
2,234,120 - -1.0
2,234,120 - -0.9
2,234,129 + -2.1
2,234,232 + +0.7
2,234,232 + -1.2
2,234,232 + +1.7
2,234,233 - +0.6
2,234,233 - +0.4
2,234,322 + SMc04351 0.15 -0.8
2,234,323 - SMc04351 0.15 -1.2
2,234,849 + SMc04351 0.42 -1.7
2,235,132 + SMc04351 0.56 +0.3
2,235,231 + SMc04351 0.61 -3.5
2,235,231 + SMc04351 0.61 -1.9
2,235,232 - SMc04351 0.61 -0.8
2,235,232 - SMc04351 0.61 -3.4
2,235,232 - SMc04351 0.61 -0.9
2,235,232 - SMc04351 0.61 -0.3
2,235,232 - SMc04351 0.61 -1.8
2,235,306 + SMc04351 0.65 -3.9
2,235,306 + SMc04351 0.65 -2.4
2,235,306 + SMc04351 0.65 -3.4
2,235,487 + SMc04351 0.74 -0.8
2,235,488 - SMc04351 0.74 +0.5
2,235,488 - SMc04351 0.74 -1.4
2,235,745 + SMc04351 0.88 -1.7
2,235,745 + SMc04351 0.88 -0.7
2,235,746 - SMc04351 0.88 +0.0
2,235,746 - SMc04351 0.88 -0.2
2,235,828 + +0.6
2,235,837 - -1.6
2,236,079 + -3.9
2,236,080 - -0.1
2,236,080 - -3.3
2,236,109 - SMc04352 0.12 -0.7
2,236,109 - SMc04352 0.12 -0.6
2,236,112 + +0.6
2,236,112 + SMc04352 0.12 -2.6
2,236,112 + SMc04352 0.12 +1.0
2,236,113 - SMc04352 0.12 -0.7
2,236,114 + SMc04352 0.12 -0.6
2,236,114 + SMc04352 0.12 -1.8
2,236,115 - SMc04352 0.13 +0.3
2,236,310 - SMc04352 0.46 +0.8
2,236,538 + SMc04352 0.84 -1.0
2,236,539 - SMc04352 0.84 -0.3
2,236,658 - +1.2
2,236,661 + -0.9
2,236,661 + -1.3
2,236,662 - -2.8
2,236,662 - -1.2
2,236,671 + +0.6
2,236,672 - -0.1
2,236,846 - +0.3
2,236,897 - SMc04357 0.14 +0.0

Or see this region's nucleotide sequence