Experiment: Chlorite 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04212 and SMc04213 are separated by 28 nucleotides SMc04213 and SMc04214 are separated by 204 nucleotides SMc04214 and SMc04215 are separated by 138 nucleotides SMc04215 and SMc04216 are separated by 46 nucleotides
SMc04212: SMc04212 - sensor histidine kinase transmembrane protein, at 2,040,134 to 2,041,669
SMc04212
SMc04213: SMc04213 - diacylglycerol kinase, at 2,041,698 to 2,042,111
SMc04213
SMc04214: SMc04214 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 2,042,316 to 2,043,332
SMc04214
SMc04215: SMc04215 - cobalamin synthase, at 2,043,471 to 2,044,259
SMc04215
SMc04216: SMc04216 - hypothetical protein, at 2,044,306 to 2,044,527
SMc04216
Position (kb)
2042
2043
2044 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2041.376 kb on + strand, within SMc04212 at 2041.722 kb on + strand at 2041.722 kb on + strand at 2041.729 kb on + strand at 2041.729 kb on + strand at 2041.730 kb on - strand at 2041.730 kb on - strand at 2041.906 kb on + strand, within SMc04213 at 2041.907 kb on - strand, within SMc04213 at 2042.021 kb on - strand, within SMc04213 at 2042.093 kb on + strand at 2042.093 kb on + strand at 2042.094 kb on - strand at 2042.253 kb on + strand at 2042.254 kb on - strand at 2042.272 kb on + strand at 2042.273 kb on - strand at 2042.331 kb on + strand at 2042.332 kb on - strand at 2043.372 kb on + strand at 2043.373 kb on - strand at 2044.268 kb on + strand at 2044.268 kb on + strand at 2044.270 kb on + strand at 2044.271 kb on - strand at 2044.271 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.1 mM remove 2,041,376 + SMc04212 0.81 +0.2 2,041,722 + -0.4 2,041,722 + -0.8 2,041,729 + -1.1 2,041,729 + -0.4 2,041,730 - +0.5 2,041,730 - +2.1 2,041,906 + SMc04213 0.50 +1.1 2,041,907 - SMc04213 0.50 +0.2 2,042,021 - SMc04213 0.78 -1.0 2,042,093 + -1.5 2,042,093 + -2.0 2,042,094 - -1.7 2,042,253 + -1.1 2,042,254 - +0.6 2,042,272 + +1.0 2,042,273 - -1.0 2,042,331 + -3.3 2,042,332 - -0.8 2,043,372 + -3.6 2,043,373 - -0.5 2,044,268 + +0.1 2,044,268 + +1.3 2,044,270 + -1.8 2,044,271 - -0.3 2,044,271 - -2.0
Or see this region's nucleotide sequence