Experiment: Chlorite 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03289 and SMc03290 are separated by 845 nucleotides SMc03290 and SMc04428 are separated by 889 nucleotides
SMc03289: SMc03289 - hypothetical protein, at 3,406,801 to 3,406,983
SMc03289
SMc03290: SMc03290 - hypothetical protein, at 3,407,829 to 3,408,230
SMc03290
SMc04428: SMc04428 - hypothetical protein, at 3,409,120 to 3,409,551
SMc04428
Position (kb)
3407
3408
3409 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3406.909 kb on + strand, within SMc03289 at 3406.909 kb on + strand, within SMc03289 at 3406.909 kb on + strand, within SMc03289 at 3406.934 kb on + strand, within SMc03289 at 3406.950 kb on + strand, within SMc03289 at 3407.062 kb on + strand at 3407.099 kb on - strand at 3407.188 kb on - strand at 3407.193 kb on + strand at 3407.193 kb on + strand at 3407.193 kb on + strand at 3407.193 kb on + strand at 3407.193 kb on + strand at 3407.194 kb on - strand at 3407.194 kb on - strand at 3407.194 kb on - strand at 3407.194 kb on - strand at 3407.231 kb on + strand at 3407.241 kb on + strand at 3407.314 kb on - strand at 3407.314 kb on - strand at 3407.413 kb on + strand at 3407.598 kb on + strand at 3407.599 kb on - strand at 3407.605 kb on + strand at 3407.629 kb on + strand at 3407.636 kb on + strand at 3407.637 kb on - strand at 3407.640 kb on + strand at 3407.719 kb on + strand at 3407.720 kb on - strand at 3407.779 kb on + strand at 3407.779 kb on + strand at 3407.779 kb on + strand at 3407.831 kb on - strand at 3407.860 kb on - strand at 3407.869 kb on - strand at 3407.890 kb on + strand, within SMc03290 at 3407.922 kb on - strand, within SMc03290 at 3407.924 kb on + strand, within SMc03290 at 3407.924 kb on + strand, within SMc03290 at 3408.105 kb on + strand, within SMc03290 at 3408.105 kb on + strand, within SMc03290 at 3408.127 kb on + strand, within SMc03290 at 3408.296 kb on - strand at 3408.478 kb on - strand at 3408.478 kb on - strand at 3408.478 kb on - strand at 3408.478 kb on - strand at 3408.710 kb on - strand at 3408.763 kb on - strand at 3408.812 kb on + strand at 3408.832 kb on - strand at 3408.832 kb on - strand at 3408.834 kb on + strand at 3408.987 kb on + strand at 3408.987 kb on + strand at 3408.987 kb on + strand at 3408.987 kb on + strand at 3408.987 kb on + strand at 3408.987 kb on + strand at 3408.987 kb on + strand at 3408.987 kb on + strand at 3409.217 kb on + strand, within SMc04428 at 3409.217 kb on + strand, within SMc04428 at 3409.218 kb on - strand, within SMc04428
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.1 mM remove 3,406,909 + SMc03289 0.59 +1.1 3,406,909 + SMc03289 0.59 -0.7 3,406,909 + SMc03289 0.59 +0.3 3,406,934 + SMc03289 0.73 +1.7 3,406,950 + SMc03289 0.81 -1.3 3,407,062 + +1.4 3,407,099 - +1.6 3,407,188 - -0.9 3,407,193 + +0.7 3,407,193 + +0.2 3,407,193 + -0.5 3,407,193 + +2.0 3,407,193 + -0.6 3,407,194 - -2.8 3,407,194 - +0.9 3,407,194 - -0.0 3,407,194 - -1.9 3,407,231 + +1.3 3,407,241 + +2.3 3,407,314 - -0.4 3,407,314 - -0.4 3,407,413 + +0.7 3,407,598 + +1.3 3,407,599 - -0.8 3,407,605 + +4.0 3,407,629 + -0.2 3,407,636 + -2.7 3,407,637 - -0.2 3,407,640 + +0.4 3,407,719 + +0.1 3,407,720 - -1.5 3,407,779 + +0.2 3,407,779 + +2.3 3,407,779 + +1.4 3,407,831 - -0.2 3,407,860 - +0.3 3,407,869 - -0.6 3,407,890 + SMc03290 0.15 -0.6 3,407,922 - SMc03290 0.23 +0.1 3,407,924 + SMc03290 0.24 -0.5 3,407,924 + SMc03290 0.24 +2.5 3,408,105 + SMc03290 0.69 -0.2 3,408,105 + SMc03290 0.69 -1.2 3,408,127 + SMc03290 0.74 -1.0 3,408,296 - +1.0 3,408,478 - -0.3 3,408,478 - -0.4 3,408,478 - -1.9 3,408,478 - -0.7 3,408,710 - +0.5 3,408,763 - +0.2 3,408,812 + +0.5 3,408,832 - -0.2 3,408,832 - -0.9 3,408,834 + -1.7 3,408,987 + -0.6 3,408,987 + +0.4 3,408,987 + +1.3 3,408,987 + -1.0 3,408,987 + +0.5 3,408,987 + -1.9 3,408,987 + +0.5 3,408,987 + -0.6 3,409,217 + SMc04428 0.22 -1.9 3,409,217 + SMc04428 0.22 +0.1 3,409,218 - SMc04428 0.23 +0.3
Or see this region's nucleotide sequence