Strain Fitness in Sinorhizobium meliloti 1021 around SMc03197

Experiment: Chlorite 0.1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc03196 and SMc03197 are separated by 169 nucleotidesSMc03197 and SMc03198 overlap by 4 nucleotides SMc03196: SMc03196 - molybdate ABC transporter substrate-binding protein, at 3,159,930 to 3,160,715 SMc03196 SMc03197: SMc03197 - molybdate ABC transporter permease, at 3,160,885 to 3,161,586 SMc03197 SMc03198: SMc03198 - molybdenum ABC transporter ATP-binding protein, at 3,161,583 to 3,162,656 SMc03198 Position (kb) 3160 3161 3162Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3159.892 kb on + strandat 3159.893 kb on - strandat 3159.906 kb on + strandat 3159.961 kb on + strandat 3160.207 kb on - strand, within SMc03196at 3160.392 kb on + strand, within SMc03196at 3160.392 kb on + strand, within SMc03196at 3160.392 kb on + strand, within SMc03196at 3160.393 kb on - strand, within SMc03196at 3160.393 kb on - strand, within SMc03196at 3160.596 kb on + strand, within SMc03196at 3160.596 kb on + strand, within SMc03196at 3160.596 kb on + strand, within SMc03196at 3160.597 kb on - strand, within SMc03196at 3160.878 kb on + strandat 3160.879 kb on - strandat 3160.997 kb on + strand, within SMc03197at 3160.997 kb on + strand, within SMc03197at 3160.998 kb on - strand, within SMc03197at 3160.998 kb on - strand, within SMc03197at 3160.998 kb on - strand, within SMc03197at 3161.049 kb on + strand, within SMc03197at 3161.050 kb on - strand, within SMc03197at 3161.050 kb on - strand, within SMc03197at 3161.072 kb on + strand, within SMc03197at 3161.449 kb on + strand, within SMc03197at 3161.449 kb on + strand, within SMc03197at 3161.449 kb on + strand, within SMc03197at 3161.449 kb on + strand, within SMc03197at 3161.450 kb on - strand, within SMc03197at 3161.450 kb on - strand, within SMc03197at 3161.450 kb on - strand, within SMc03197at 3161.451 kb on + strand, within SMc03197at 3161.820 kb on + strand, within SMc03198at 3161.877 kb on + strand, within SMc03198at 3161.878 kb on - strand, within SMc03198at 3161.878 kb on - strand, within SMc03198at 3162.102 kb on + strand, within SMc03198at 3162.103 kb on - strand, within SMc03198at 3162.144 kb on + strand, within SMc03198at 3162.144 kb on + strand, within SMc03198at 3162.144 kb on + strandat 3162.144 kb on + strand, within SMc03198at 3162.145 kb on - strand, within SMc03198at 3162.145 kb on - strand, within SMc03198at 3162.347 kb on - strand, within SMc03198at 3162.414 kb on + strand, within SMc03198at 3162.414 kb on + strand, within SMc03198at 3162.539 kb on - strand, within SMc03198at 3162.539 kb on - strand, within SMc03198

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
remove
3,159,892 + -0.1
3,159,893 - +0.1
3,159,906 + +0.7
3,159,961 + -4.1
3,160,207 - SMc03196 0.35 -2.0
3,160,392 + SMc03196 0.59 -3.2
3,160,392 + SMc03196 0.59 -2.2
3,160,392 + SMc03196 0.59 -4.3
3,160,393 - SMc03196 0.59 +1.4
3,160,393 - SMc03196 0.59 -1.7
3,160,596 + SMc03196 0.85 +3.5
3,160,596 + SMc03196 0.85 -3.3
3,160,596 + SMc03196 0.85 -2.7
3,160,597 - SMc03196 0.85 +0.7
3,160,878 + -4.5
3,160,879 - -3.4
3,160,997 + SMc03197 0.16 -1.1
3,160,997 + SMc03197 0.16 -3.1
3,160,998 - SMc03197 0.16 -3.2
3,160,998 - SMc03197 0.16 -4.1
3,160,998 - SMc03197 0.16 -1.9
3,161,049 + SMc03197 0.23 -1.5
3,161,050 - SMc03197 0.24 -3.9
3,161,050 - SMc03197 0.24 -3.7
3,161,072 + SMc03197 0.27 -3.6
3,161,449 + SMc03197 0.80 -1.1
3,161,449 + SMc03197 0.80 -1.2
3,161,449 + SMc03197 0.80 -1.5
3,161,449 + SMc03197 0.80 -3.2
3,161,450 - SMc03197 0.80 -2.7
3,161,450 - SMc03197 0.80 -2.5
3,161,450 - SMc03197 0.80 +0.7
3,161,451 + SMc03197 0.81 -1.8
3,161,820 + SMc03198 0.22 -3.0
3,161,877 + SMc03198 0.27 -0.6
3,161,878 - SMc03198 0.27 -1.3
3,161,878 - SMc03198 0.27 -2.5
3,162,102 + SMc03198 0.48 +0.2
3,162,103 - SMc03198 0.48 -2.2
3,162,144 + SMc03198 0.52 -2.8
3,162,144 + SMc03198 0.52 -4.5
3,162,144 + +0.7
3,162,144 + SMc03198 0.52 -0.9
3,162,145 - SMc03198 0.52 -3.2
3,162,145 - SMc03198 0.52 -3.1
3,162,347 - SMc03198 0.71 +0.3
3,162,414 + SMc03198 0.77 +1.8
3,162,414 + SMc03198 0.77 -1.0
3,162,539 - SMc03198 0.89 -0.9
3,162,539 - SMc03198 0.89 -0.3

Or see this region's nucleotide sequence