Strain Fitness in Sinorhizobium meliloti 1021 around SMc03012

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03010 and SMc03011 overlap by 1 nucleotidesSMc03011 and SMc03012 overlap by 4 nucleotidesSMc03012 and SMc03013 are separated by 29 nucleotides SMc03010: SMc03010 - chemotaxis-specific methylesterase, at 708,133 to 709,182 SMc03010 SMc03011: SMc03011 - chemotaxis regulator protein, at 709,182 to 709,571 SMc03011 SMc03012: SMc03012 - chemoreceptor glutamine deamidase CheD, at 709,568 to 710,119 SMc03012 SMc03013: SMc03013 - hypothetical protein, at 710,149 to 710,523 SMc03013 Position (kb) 709 710 711Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 708.808 kb on + strand, within SMc03010at 708.846 kb on + strand, within SMc03010at 709.087 kb on + strandat 709.087 kb on + strandat 709.088 kb on - strandat 709.180 kb on + strandat 709.181 kb on - strandat 709.202 kb on - strandat 709.776 kb on - strand, within SMc03012at 710.024 kb on + strand, within SMc03012at 710.024 kb on + strand, within SMc03012at 710.025 kb on - strand, within SMc03012at 710.252 kb on + strand, within SMc03013at 710.252 kb on + strand, within SMc03013at 710.252 kb on + strand, within SMc03013at 710.253 kb on - strand, within SMc03013at 710.362 kb on - strand, within SMc03013at 710.582 kb on + strandat 710.584 kb on + strandat 710.584 kb on + strandat 710.584 kb on + strandat 710.585 kb on - strandat 710.702 kb on + strandat 710.702 kb on + strandat 710.746 kb on + strandat 710.747 kb on - strandat 710.831 kb on + strandat 710.832 kb on - strandat 710.832 kb on - strandat 710.832 kb on - strandat 710.832 kb on - strandat 710.832 kb on - strandat 710.832 kb on - strandat 710.832 kb on - strandat 710.835 kb on + strandat 710.835 kb on + strandat 710.835 kb on + strandat 710.835 kb on + strandat 710.835 kb on + strandat 710.835 kb on + strandat 710.835 kb on + strandat 710.835 kb on + strandat 710.835 kb on + strandat 710.835 kb on + strandat 710.835 kb on + strandat 710.836 kb on - strandat 710.836 kb on - strandat 710.836 kb on - strandat 710.836 kb on - strandat 710.836 kb on - strandat 710.836 kb on - strandat 710.836 kb on - strandat 710.836 kb on - strandat 710.836 kb on - strandat 710.836 kb on - strandat 710.836 kb on - strandat 710.836 kb on - strandat 710.837 kb on + strandat 710.838 kb on - strandat 710.839 kb on + strandat 710.839 kb on + strandat 710.840 kb on - strandat 710.841 kb on - strandat 710.845 kb on - strandat 710.922 kb on - strandat 710.948 kb on - strandat 710.948 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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708,808 + SMc03010 0.64 -1.1
708,846 + SMc03010 0.68 -0.1
709,087 + +2.2
709,087 + +1.1
709,088 - -1.6
709,180 + -0.8
709,181 - +0.6
709,202 - -0.4
709,776 - SMc03012 0.38 -1.4
710,024 + SMc03012 0.83 -0.3
710,024 + SMc03012 0.83 -1.6
710,025 - SMc03012 0.83 +1.1
710,252 + SMc03013 0.27 -1.0
710,252 + SMc03013 0.27 -0.0
710,252 + SMc03013 0.27 +0.3
710,253 - SMc03013 0.28 -4.1
710,362 - SMc03013 0.57 -0.4
710,582 + -4.1
710,584 + -0.1
710,584 + -1.4
710,584 + -0.6
710,585 - -0.2
710,702 + +0.9
710,702 + -0.7
710,746 + +0.8
710,747 - +1.7
710,831 + -0.9
710,832 - -0.5
710,832 - -1.6
710,832 - +0.6
710,832 - -0.6
710,832 - -0.1
710,832 - -0.9
710,832 - -0.2
710,835 + -2.3
710,835 + +0.6
710,835 + +1.4
710,835 + -0.9
710,835 + -2.8
710,835 + -1.2
710,835 + +0.5
710,835 + +0.2
710,835 + -0.6
710,835 + -4.1
710,835 + +1.1
710,836 - -0.2
710,836 - -0.4
710,836 - +0.3
710,836 - +2.1
710,836 - +0.8
710,836 - +0.2
710,836 - -0.4
710,836 - -3.3
710,836 - +0.2
710,836 - +0.2
710,836 - +0.4
710,836 - -0.4
710,837 + -0.3
710,838 - +1.0
710,839 + -1.1
710,839 + +0.6
710,840 - -2.7
710,841 - +0.0
710,845 - +0.6
710,922 - -0.6
710,948 - -0.7
710,948 - -0.1

Or see this region's nucleotide sequence