Experiment: Chlorite 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02850 and SMc02851 are separated by 472 nucleotides SMc02851 and SMc02852 are separated by 98 nucleotides
SMc02850: SMc02850 - DNA polymerase I, at 198,469 to 201,483
SMc02850
SMc02851: SMc02851 - transcriptional regulator, at 201,956 to 202,399
SMc02851
SMc02852: SMc02852 - hypothetical protein, at 202,498 to 203,892
SMc02852
Position (kb)
201
202
203 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 201.542 kb on + strand at 201.543 kb on - strand at 201.545 kb on + strand at 201.546 kb on - strand at 201.546 kb on - strand at 201.691 kb on + strand at 201.691 kb on + strand at 201.691 kb on + strand at 201.692 kb on - strand at 201.692 kb on - strand at 201.692 kb on - strand at 201.918 kb on + strand at 201.918 kb on + strand at 201.918 kb on + strand at 201.919 kb on - strand at 201.919 kb on - strand at 201.919 kb on - strand at 201.951 kb on + strand at 201.952 kb on - strand at 201.987 kb on - strand at 202.027 kb on - strand, within SMc02851 at 202.086 kb on + strand, within SMc02851 at 202.087 kb on - strand, within SMc02851 at 202.087 kb on - strand, within SMc02851 at 202.087 kb on - strand, within SMc02851 at 202.159 kb on + strand, within SMc02851 at 202.160 kb on - strand, within SMc02851 at 202.160 kb on - strand, within SMc02851 at 202.234 kb on - strand, within SMc02851 at 202.234 kb on - strand, within SMc02851 at 202.349 kb on + strand, within SMc02851 at 202.349 kb on + strand, within SMc02851 at 202.350 kb on - strand, within SMc02851 at 202.350 kb on - strand, within SMc02851 at 202.350 kb on - strand, within SMc02851 at 202.350 kb on - strand, within SMc02851 at 202.352 kb on - strand, within SMc02851 at 202.352 kb on - strand, within SMc02851 at 202.509 kb on + strand at 202.509 kb on + strand at 202.510 kb on - strand at 202.510 kb on - strand at 202.768 kb on + strand, within SMc02852 at 202.925 kb on - strand, within SMc02852 at 202.926 kb on + strand, within SMc02852 at 202.926 kb on + strand, within SMc02852 at 202.927 kb on - strand, within SMc02852 at 203.047 kb on + strand, within SMc02852 at 203.048 kb on - strand, within SMc02852 at 203.304 kb on + strand, within SMc02852 at 203.304 kb on + strand, within SMc02852 at 203.304 kb on + strand, within SMc02852 at 203.305 kb on - strand, within SMc02852 at 203.305 kb on - strand, within SMc02852
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.1 mM remove 201,542 + +1.7 201,543 - -0.3 201,545 + +3.0 201,546 - -1.6 201,546 - -2.5 201,691 + +0.6 201,691 + +0.2 201,691 + +0.3 201,692 - +0.9 201,692 - +0.8 201,692 - -1.3 201,918 + +0.4 201,918 + -2.2 201,918 + -1.2 201,919 - +0.7 201,919 - +0.1 201,919 - +0.1 201,951 + +0.5 201,952 - -0.1 201,987 - -0.1 202,027 - SMc02851 0.16 +1.1 202,086 + SMc02851 0.29 -1.2 202,087 - SMc02851 0.30 +0.2 202,087 - SMc02851 0.30 -1.1 202,087 - SMc02851 0.30 +0.3 202,159 + SMc02851 0.46 -3.6 202,160 - SMc02851 0.46 +0.4 202,160 - SMc02851 0.46 +2.8 202,234 - SMc02851 0.63 +2.0 202,234 - SMc02851 0.63 +1.8 202,349 + SMc02851 0.89 -0.4 202,349 + SMc02851 0.89 -0.8 202,350 - SMc02851 0.89 -0.8 202,350 - SMc02851 0.89 +2.8 202,350 - SMc02851 0.89 +0.8 202,350 - SMc02851 0.89 -3.6 202,352 - SMc02851 0.89 +0.5 202,352 - SMc02851 0.89 -0.1 202,509 + +0.3 202,509 + -0.7 202,510 - -1.4 202,510 - -1.2 202,768 + SMc02852 0.19 +0.9 202,925 - SMc02852 0.31 +0.7 202,926 + SMc02852 0.31 +0.6 202,926 + SMc02852 0.31 -4.2 202,927 - SMc02852 0.31 +0.3 203,047 + SMc02852 0.39 +1.7 203,048 - SMc02852 0.39 -0.4 203,304 + SMc02852 0.58 +0.2 203,304 + SMc02852 0.58 +1.1 203,304 + SMc02852 0.58 -0.6 203,305 - SMc02852 0.58 +0.3 203,305 - SMc02852 0.58 +0.3
Or see this region's nucleotide sequence